Factsheet for Zm00001d038840_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 14690504
extracellular: 20408568
mitochondrion: 22607058
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 22607058 doi

D Dahal, BP Mooney, KJ Newton

Division of Biological Sciences, University of Missouri, Columbia, MO 65211, USA.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 14690504

F Hochholdinger, L Guo, PS Schnable

Department of Agronomy, Iowa State University, Ames, IA 50011, USA.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18574	Sorghum	cytosol	96.74	96.74
Zm00001d011135_P001	Maize	cytosol, mitochondrion, nucleus	81.16	80.87
Os05t0536200-01	Rice	mitochondrion	80.8	79.64
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	70.29	70.55
GSMUA_Achr7P00060_001	Banana	cytosol	69.93	70.18
HORVU5Hr1G124370.1	Barley	cytosol, mitochondrion, plastid	25.0	68.32
TraesCS1D01G361900.1	Wheat	golgi	70.65	67.71
Zm00001d020219_P004	Maize	cytosol	67.39	67.39
TraesCS1B01G374200.1	Wheat	golgi, unclear	69.93	67.01
HORVU3Hr1G013220.1	Barley	cytosol	24.28	66.34
GSMUA_Achr3P20500_001	Banana	cytosol	65.22	65.45
Zm00001d005649_P001	Maize	cytosol	25.36	64.81
Zm00001d044318_P001	Maize	cytosol, mitochondrion	64.49	64.73
Zm00001d011242_P002	Maize	cytosol	65.94	60.07
Zm00001d043661_P001	Maize	cytosol	58.7	58.48
HORVU1Hr1G080370.2	Barley	plastid	68.84	57.58
Zm00001d048149_P002	Maize	mitochondrion	45.65	45.82
Zm00001d028102_P001	Maize	mitochondrion	44.93	45.09
Zm00001d027580_P001	Maize	mitochondrion	42.39	41.34
KRH56957	Soybean	cytosol	34.06	38.37
Zm00001d027578_P001	Maize	peroxisome	35.14	38.04
KRH03426	Soybean	cytosol	33.33	37.55
KRH63406	Soybean	cytosol	33.33	37.1
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	34.06	36.43
KRH54504	Soybean	cytosol	32.25	35.89
Solyc03g113210.2.1	Tomato	cytosol	29.35	34.32
PGSC0003DMT400065213	Potato	cytosol	28.99	33.47
Zm00001d048362_P002	Maize	endoplasmic reticulum, plasma membrane	40.58	30.19
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	17.39	29.45
CDY39954	Canola	extracellular	14.49	18.87
CDY01000	Canola	endoplasmic reticulum, plasma membrane	24.64	18.84

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	EntrezGene:541796	EMBL:AF178952	ProteinID:AQK88005.1	EMBL:BT040062
EMBL:EU962130	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008308
GO:GO:0015698	GO:GO:0016020	GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614	PFAM:PF01459
ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF34	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf
UniProt:Q9SPD7	UniParc:UPI00000ACD40	EnsemblPlantsGene:Zm00001d038840	EnsemblPlants:Zm00001d038840_P001	EnsemblPlants:Zm00001d038840_T001	SEG:seg

Description

voltage-dependent anion channel protein2 voltage-dependent anion channel protein2

Coordinates

chr6:+:165624432..165627829

Molecular Weight (calculated)

29179.4 Da

IEP (calculated)

8.402

GRAVY (calculated)

-0.121

Length

276 amino acids

Sequence
(BLAST)

001: MAAAGPGLYS EIGKKARDLL YKDYHTDQKF TLTTYAANGA AITAASTRKD EAIFNEIQSQ LKHNNVTVDV KATSESNVIT TITVHELGTP GLKAILCVPF
101: PYQKSAKAEL QYLHHHAGVA ASVGLNANPV VNLSGVFGTK AIAVGADAAF DTSSGDLTKY NAGLSYTTPD FVAAATLNNK GDNIAASYYH SVSPTTAVGG
201: ELSHSFSTNG NTITFGTQHA LDPLTTVKAR FNNYGMASAL IQHEWRPKSL VTISTEVDTK AIEKSSKVGL SLVLKP

Best Arabidopsis Sequence Match ( AT5G15090.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY RDYQGDQKFS VTTYSSTGVA ITTTGTNKGS LFLGDVATQV KNNNFTADVK VSTDSSLLTT LTFDEPAPGL KVIVQAKLPD
101: HKSGKAEVQY FHDYAGISTS VGFTATPIVN FSGVVGTNGL SLGTDVAYNT ESGNFKHFNA GFNFTKDDLT ASLILNDKGE KLNASYYQIV SPSTVVGAEI
201: SHNFTTKENA ITVGTQHALD PLTTVKARVN NAGVANALIQ HEWRPKSFFT VSGEVDSKAI DKSAKVGIAL ALKP

Arabidopsis Description

VDAC3Mitochondrial outer membrane protein porin 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMX3]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.