CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038840_P001	Maize	mitochondrion	96.74	96.74
Zm00001d011135_P001	Maize	cytosol, mitochondrion, nucleus	80.43	80.14
Os05t0536200-01	Rice	mitochondrion	80.07	78.93
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	69.57	69.82
GSMUA_Achr7P00060_001	Banana	cytosol	69.57	69.82
EER96631	Sorghum	cytosol	68.12	68.12
HORVU5Hr1G124370.1	Barley	cytosol, mitochondrion, plastid	24.64	67.33
EES03523	Sorghum	cytosol	67.03	66.79
HORVU3Hr1G013220.1	Barley	cytosol	24.28	66.34
TraesCS1D01G361900.1	Wheat	golgi	69.2	66.32
TraesCS1B01G374200.1	Wheat	golgi, unclear	68.48	65.62
EES03185	Sorghum	cytosol	65.22	65.45
GSMUA_Achr3P20500_001	Banana	cytosol	64.86	65.09
HORVU1Hr1G080370.2	Barley	plastid	67.39	56.36
EER92681	Sorghum	mitochondrion	44.93	45.09
EER95548	Sorghum	cytosol, mitochondrion	43.12	43.12
KRH56957	Soybean	cytosol	34.06	38.37
KRH03426	Soybean	cytosol	33.33	37.55
KRH63406	Soybean	cytosol	33.7	37.5
KRH54504	Soybean	cytosol	32.25	35.89
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	33.33	35.66
Solyc03g113210.2.1	Tomato	cytosol	28.99	33.9
PGSC0003DMT400065213	Potato	cytosol	28.99	33.47
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	17.39	29.45
CDY01000	Canola	endoplasmic reticulum, plasma membrane	24.28	18.56
CDY39954	Canola	extracellular	14.13	18.4

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	EntrezGene:8061064	UniProt:C5YUI7	EnsemblPlants:EES18574	ProteinID:EES18574
ProteinID:EES18574.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008308
GO:GO:0015698	GO:GO:0016020	GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614	PFAM:PF01459
ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF34	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf
EnsemblPlantsGene:SORBI_3009G212400	unigene:Sbi.1967	UniParc:UPI0001A88CCA	RefSeq:XP_002440144.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:55806661..55810398

Molecular Weight (calculated)

29248.5 Da

IEP (calculated)

8.399

GRAVY (calculated)

-0.123

Length

276 amino acids

Sequence
(BLAST)

001: MAAAGPGLYS EIGKKARDLL YKDYHTDQKF TLTTYAANGA AITAASTRKD EAIFNEIQSQ LKHNNVTVDV KATSESNLIT TITVHELGTP GLKGILCIPF
101: PYQKSAKAEL QYLHHHAGVA ASVGLNANPV VNLSGVFGTK TIAVGADAAY DTSSGDLTKY NAGLSYTTSD FVAAATLNHK GDNIAASYYH LVSPTTAVGG
201: ELSHSFSTNG NTITFGTQHA LDPLTTVKAR FNNYGMASAL IQHEWRPKSL VTISAEVDTK AIEKSSKVGL SLVLKP

Best Arabidopsis Sequence Match ( AT5G15090.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY RDYQGDQKFS VTTYSSTGVA ITTTGTNKGS LFLGDVATQV KNNNFTADVK VSTDSSLLTT LTFDEPAPGL KVIVQAKLPD
101: HKSGKAEVQY FHDYAGISTS VGFTATPIVN FSGVVGTNGL SLGTDVAYNT ESGNFKHFNA GFNFTKDDLT ASLILNDKGE KLNASYYQIV SPSTVVGAEI
201: SHNFTTKENA ITVGTQHALD PLTTVKARVN NAGVANALIQ HEWRPKSFFT VSGEVDSKAI DKSAKVGIAL ALKP

Arabidopsis Description

VDAC3Mitochondrial outer membrane protein porin 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMX3]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.