Factsheet for TraesCS1D01G361900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

golgi: 23128297
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G374200.1	Wheat	golgi, unclear	96.88	96.88
HORVU5Hr1G124370.1	Barley	cytosol, mitochondrion, plastid	31.25	89.11
HORVU3Hr1G013220.1	Barley	cytosol	30.56	87.13
HORVU1Hr1G080370.2	Barley	plastid	93.06	81.21
Os05t0536200-01	Rice	mitochondrion	71.88	73.93
Zm00001d038840_P001	Maize	mitochondrion	67.71	70.65
EES18574	Sorghum	cytosol	66.32	69.2
TraesCS5D01G196100.1	Wheat	mitochondrion	62.5	65.45
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	60.76	63.64
GSMUA_Achr7P00060_001	Banana	cytosol	60.07	62.91
TraesCS3D01G213400.1	Wheat	cytosol	60.07	62.91
Zm00001d011135_P001	Maize	cytosol, mitochondrion, nucleus	59.72	62.09
GSMUA_Achr3P20500_001	Banana	cytosol	57.99	60.73
TraesCS3D01G247900.1	Wheat	cytosol	55.9	50.0
TraesCS4D01G258900.1	Wheat	cytosol	43.4	45.45
TraesCS4D01G331900.1	Wheat	nucleus	40.97	43.07
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	33.33	37.21
KRH56957	Soybean	cytosol	31.6	37.14
KRH03426	Soybean	cytosol	31.25	36.73
KRH63406	Soybean	cytosol	30.56	35.48
KRH54504	Soybean	cytosol	29.51	34.27
Solyc03g113210.2.1	Tomato	cytosol	27.78	33.9
PGSC0003DMT400065213	Potato	cytosol	27.43	33.05
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	17.36	30.67
TraesCS7D01G167200.1	Wheat	mitochondrion	27.43	29.04
CDY39954	Canola	extracellular	14.93	20.28
CDY01000	Canola	endoplasmic reticulum, plasma membrane	23.96	19.11

Protein Annotations

EnsemblPlants:TraesCS1D01G361900.1	EnsemblPlantsGene:TraesCS1D01G361900	Gene3D:2.40.160.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0055085	InterPro:IPR023614	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	PANTHER:PTHR11743	PANTHER:PTHR11743:SF34
PFAM:PF01459	SEG:seg	TIGR:cd07306	MapMan:24.4.1	:	:

Description

No Description!

Coordinates

chr1D:+:444368570..444371424

Molecular Weight (calculated)

30622.1 Da

IEP (calculated)

9.815

GRAVY (calculated)

-0.229

Length

288 amino acids

Sequence
(BLAST)

001: MDAAKPAPAP ARPAGPGLYA DIGKKARDLL NRDYTTGQKF TFTTTAANGA TITSSSTKKN EAIVADLQTQ VKIKNFTVDV KATSDSSVVT TITVPELYTP
101: GLKGVLSLPF PYQKSTPGKA ELQYLHPHLG INGSVGLNSN PLVNFSGVIG TKAFAFGVDV AFDTASGDFT KYNAGLSHTN QDLTASLNLN NKANTLAASY
201: YHQVQRTTAV GAEIAHSFSS NENTITVGTQ HELDPLTTVK GRYNNFGIAS ALIQHAWRPK SLITFSTEVD TKAIEKSPKF GLALSLKP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.