Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 5
- plasma membrane 6
- endoplasmic reticulum 6
- vacuole 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G37610.1 | Thale cress | endoplasmic reticulum, extracellular | 12.47 | 27.61 |
| EES03185 | Sorghum | cytosol | 20.78 | 27.27 |
| Os01t0588200-01 | Rice | mitochondrion, plasma membrane | 20.5 | 26.91 |
| Solyc03g113210.2.1 | Tomato | cytosol | 17.45 | 26.69 |
| Zm00001d044318_P001 | Maize | cytosol, mitochondrion | 20.22 | 26.55 |
| TraesCS3D01G213400.1 | Wheat | cytosol | 20.22 | 26.55 |
| TraesCS3B01G241200.1 | Wheat | cytosol, golgi, unclear | 20.22 | 26.55 |
| GSMUA_Achr7P08830_001 | Banana | cytosol | 20.22 | 26.55 |
| HORVU3Hr1G051010.2 | Barley | cytosol, plasma membrane | 19.94 | 26.18 |
| TraesCS5A01G193700.1 | Wheat | golgi, unclear | 19.94 | 26.18 |
| TraesCS3A01G210600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 19.94 | 26.18 |
| CDY28690 | Canola | cytosol | 19.94 | 26.09 |
| CDY66736 | Canola | cytosol, mitochondrion, nucleus | 19.94 | 26.09 |
| TraesCS5B01G189000.1 | Wheat | mitochondrion | 19.67 | 25.82 |
| TraesCS5D01G196100.1 | Wheat | mitochondrion | 19.67 | 25.82 |
| GSMUA_Achr7P23900_001 | Banana | cytosol, unclear | 19.67 | 25.82 |
| GSMUA_Achr6P04840_001 | Banana | cytosol | 19.39 | 25.64 |
| CDY59668 | Canola | cytosol | 19.39 | 25.36 |
| CDY63765 | Canola | cytosol | 19.39 | 25.36 |
| CDY69321 | Canola | cytosol | 19.39 | 25.36 |
| VIT_17s0000g05690.t01 | Wine grape | cytosol, mitochondrion | 18.01 | 25.19 |
| PGSC0003DMT400065213 | Potato | cytosol | 16.62 | 25.1 |
| GSMUA_Achr7P00060_001 | Banana | cytosol | 19.11 | 25.09 |
| CDX74294 | Canola | cytosol, mitochondrion | 19.11 | 25.0 |
| CDY68122 | Canola | cytosol | 19.11 | 25.0 |
| Os01t0715500-00 | Rice | cytosol, mitochondrion, plasma membrane | 14.4 | 24.88 |
| CDX91952 | Canola | mitochondrion | 18.84 | 24.64 |
| Zm00001d038840_P001 | Maize | mitochondrion | 18.84 | 24.64 |
| Zm00001d011135_P001 | Maize | cytosol, mitochondrion, nucleus | 18.84 | 24.55 |
| GSMUA_Achr3P20500_001 | Banana | cytosol | 18.56 | 24.36 |
| TraesCS1B01G374200.1 | Wheat | golgi, unclear | 19.39 | 24.31 |
| Os05t0536200-01 | Rice | mitochondrion | 18.84 | 24.29 |
| EES18574 | Sorghum | cytosol | 18.56 | 24.28 |
| EER96631 | Sorghum | cytosol | 18.56 | 24.28 |
| Zm00001d020219_P004 | Maize | cytosol | 18.56 | 24.28 |
| Zm00001d011242_P002 | Maize | cytosol | 20.22 | 24.09 |
| TraesCS1D01G361900.1 | Wheat | golgi | 19.11 | 23.96 |
| KRH56957 | Soybean | cytosol | 16.07 | 23.67 |
| CDY02103 | Canola | cytosol, mitochondrion, nucleus | 18.01 | 23.55 |
| EES03523 | Sorghum | cytosol | 18.01 | 23.47 |
| KRH03426 | Soybean | cytosol | 15.79 | 23.27 |
| Zm00001d043661_P001 | Maize | cytosol | 17.45 | 22.74 |
| CDY11866 | Canola | cytosol | 16.9 | 22.26 |
| CDY59666 | Canola | cytosol | 4.99 | 22.22 |
| TraesCS7D01G167200.1 | Wheat | mitochondrion | 16.62 | 22.06 |
| TraesCS3B01G276600.1 | Wheat | cytosol, plasma membrane, plastid | 17.45 | 22.03 |
| CDY70638 | Canola | cytosol, mitochondrion | 15.24 | 22.0 |
| CDX88625 | Canola | cytosol | 16.62 | 21.9 |
| HORVU5Hr1G124370.1 | Barley | cytosol, mitochondrion, plastid | 6.09 | 21.78 |
| HORVU3Hr1G013220.1 | Barley | cytosol | 6.09 | 21.78 |
| CDY08723 | Canola | cytosol, nucleus, plastid | 16.34 | 21.38 |
| KRH54504 | Soybean | cytosol | 14.68 | 21.37 |
| CDX81312 | Canola | cytosol, mitochondrion, nucleus | 16.07 | 21.01 |
| CDY18662 | Canola | cytosol | 16.07 | 21.01 |
| CDY36497 | Canola | cytosol, nucleus, plastid | 16.07 | 21.01 |
| KRH63406 | Soybean | cytosol | 14.4 | 20.97 |
| TraesCS3D01G247900.1 | Wheat | cytosol | 18.28 | 20.5 |
| CDY43581 | Canola | mitochondrion | 3.6 | 20.31 |
| HORVU1Hr1G080370.2 | Barley | plastid | 18.28 | 20.0 |
| TraesCS3A01G247900.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 18.01 | 19.64 |
| Zm00001d005649_P001 | Maize | cytosol | 5.54 | 18.52 |
| CDY38301 | Canola | cytosol | 8.31 | 18.07 |
| HORVU3Hr1G067610.2 | Barley | mitochondrion | 16.9 | 17.58 |
| CDY23028 | Canola | mitochondrion | 9.7 | 16.2 |
| TraesCS7A01G166600.1 | Wheat | cytosol | 19.67 | 13.76 |
| CDY39954 | Canola | extracellular | 8.03 | 13.68 |
| CDY25906 | Canola | plasma membrane | 11.63 | 12.5 |
| HORVU7Hr1G034770.11 | Barley | plastid | 19.39 | 10.16 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:24.4.1 | GO:A0A078EFY5 | EnsemblPlants:CDY01000 | ProteinID:CDY01000 | ProteinID:CDY01000.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0055085 | EnsemblPlantsGene:GSBRNA2T00111019001 | InterPro:IPR023614 |
| PFAM:PF01459 | PANTHER:PTHR11743 | InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf | TMHMM:TMhelix | UniParc:UPI0004EEC912 |
| SEG:seg | : | : | : | : | : |
Description
BnaC05g42000D
Coordinates
chrLK031923:+:556040..560474
Molecular Weight (calculated)
40584.3 Da
IEP (calculated)
9.807
GRAVY (calculated)
-0.019
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDRLLSYPV SSSFSSSLLL FIFLSIALCV YVFGYTVQLG RAYSIATLVR SYYPSELNSY FFSRGEGTKG LVQFSDIGKQ ARDLLFTDYQ QGLKASLNFD
101: PYRIRLRSSV DAGGLSGGLV ASFPDQSSSK VSLGYVHPNA IANFTTSFGL FRNPLFALSE VVGNHLWSLG FDASFDVTTQ SFRSMDFASS LISDKFIASF
201: NSYNRADLLK VYLYQSVMNS AYAVELCRQR STNTSRISIG YEHRFGSEVL VKSRVDSNGT VPALFQYKWN PGTFYSYNRR ADLLKVYLHQ SVMNSAYAVE
301: LSRQRSTNTN QDLIAMRPWL HYFSTSGIQE RFTGFQQKVA VIRGSFLVLL VLLQVEAKPS S
101: PYRIRLRSSV DAGGLSGGLV ASFPDQSSSK VSLGYVHPNA IANFTTSFGL FRNPLFALSE VVGNHLWSLG FDASFDVTTQ SFRSMDFASS LISDKFIASF
201: NSYNRADLLK VYLYQSVMNS AYAVELCRQR STNTSRISIG YEHRFGSEVL VKSRVDSNGT VPALFQYKWN PGTFYSYNRR ADLLKVYLHQ SVMNSAYAVE
301: LSRQRSTNTN QDLIAMRPWL HYFSTSGIQE RFTGFQQKVA VIRGSFLVLL VLLQVEAKPS S
001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP
Arabidopsis Description
VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [cytosol,mitochondrion]
SUBAcon: [cytosol,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.