Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43581 | Canola | mitochondrion | 34.57 | 43.75 |
| CDY70638 | Canola | cytosol, mitochondrion | 85.19 | 27.6 |
| CDY69321 | Canola | cytosol | 92.59 | 27.17 |
| CDY59668 | Canola | cytosol | 92.59 | 27.17 |
| AT5G15090.2 | Thale cress | cytosol, mitochondrion | 80.25 | 23.72 |
| CDY63765 | Canola | cytosol | 80.25 | 23.55 |
| CDY28690 | Canola | cytosol | 75.31 | 22.1 |
| KRG93501 | Soybean | endoplasmic reticulum, mitochondrion | 72.84 | 21.38 |
| CDY68122 | Canola | cytosol | 72.84 | 21.38 |
| CDY66736 | Canola | cytosol, mitochondrion, nucleus | 72.84 | 21.38 |
| KRH18503 | Soybean | mitochondrion | 71.6 | 21.01 |
| CDX91952 | Canola | mitochondrion | 71.6 | 21.01 |
| CDX74294 | Canola | cytosol, mitochondrion | 70.37 | 20.65 |
| PGSC0003DMT400005245 | Potato | cytosol | 69.14 | 20.29 |
| VIT_14s0108g00010.t01 | Wine grape | cytosol | 67.9 | 19.93 |
| KRH40133 | Soybean | mitochondrion | 66.67 | 19.57 |
| KRH01127 | Soybean | mitochondrion | 66.67 | 19.57 |
| Solyc02g067460.2.1 | Tomato | plastid | 65.43 | 19.2 |
| PGSC0003DMT400017754 | Potato | cytosol | 65.43 | 19.2 |
| Solyc03g058920.2.1 | Tomato | plastid | 69.14 | 16.57 |
| CDX88625 | Canola | cytosol | 50.62 | 14.96 |
| CDY11866 | Canola | cytosol | 49.38 | 14.6 |
| CDY38301 | Canola | cytosol | 27.16 | 13.25 |
| CDY02103 | Canola | cytosol, mitochondrion, nucleus | 44.44 | 13.04 |
| CDX81312 | Canola | cytosol, mitochondrion, nucleus | 44.44 | 13.04 |
| CDY18662 | Canola | cytosol | 44.44 | 13.04 |
| CDY36497 | Canola | cytosol, nucleus, plastid | 44.44 | 13.04 |
| CDY08723 | Canola | cytosol, nucleus, plastid | 43.21 | 12.68 |
| CDY25906 | Canola | plasma membrane | 49.38 | 11.9 |
| CDY01000 | Canola | endoplasmic reticulum, plasma membrane | 22.22 | 4.99 |
| CDY39954 | Canola | extracellular | 11.11 | 4.25 |
| CDY23028 | Canola | mitochondrion | 1.23 | 0.46 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:24.4.1 | GO:A0A078J234 | UniProt:A0A078J234 | EnsemblPlants:CDY59666 | ProteinID:CDY59666 |
| ProteinID:CDY59666.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008308 |
| GO:GO:0015698 | GO:GO:0016020 | GO:GO:0055085 | GO:GO:0098656 | EnsemblPlantsGene:GSBRNA2T00027535001 | InterPro:IPR023614 |
| PFAM:PF01459 | ScanProsite:PS00558 | PANTHER:PTHR11743 | PANTHER:PTHR11743:SF34 | InterPro:Porin_Euk | InterPro:Porin_Euk/Tom40 |
| InterPro:Porin_dom_sf | UniParc:UPI0004EBCE77 | : | : | : | : |
Description
BnaCnng35390DBnaCnng35390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J234]
Coordinates
chrLK033793:-:27950..28294
Molecular Weight (calculated)
8632.3 Da
IEP (calculated)
9.281
GRAVY (calculated)
-0.022
Length
81 amino acids
Sequence
(BLAST)
(BLAST)
1: MVVGAEVNHN LKSQVNSITV GAQHALDPLT TVKARVNNAD IANALIQHEW RPNSFITVSG EVDSKAIEKS AKVGFALALK P
001: MVKGPGLYTE IGKKARDLLY RDYQGDQKFS VTTYSSTGVA ITTTGTNKGS LFLGDVATQV KNNNFTADVK VSTDSSLLTT LTFDEPAPGL KVIVQAKLPD
101: HKSGKAEVQY FHDYAGISTS VGFTATPIVN FSGVVGTNGL SLGTDVAYNT ESGNFKHFNA GFNFTKDDLT ASLILNDKGE KLNASYYQIV SPSTVVGAEI
201: SHNFTTKENA ITVGTQHALD PLTTVKARVN NAGVANALIQ HEWRPKSFFT VSGEVDSKAI DKSAKVGIAL ALKP
101: HKSGKAEVQY FHDYAGISTS VGFTATPIVN FSGVVGTNGL SLGTDVAYNT ESGNFKHFNA GFNFTKDDLT ASLILNDKGE KLNASYYQIV SPSTVVGAEI
201: SHNFTTKENA ITVGTQHALD PLTTVKARVN NAGVANALIQ HEWRPKSFFT VSGEVDSKAI DKSAKVGIAL ALKP
Arabidopsis Description
VDAC3Mitochondrial outer membrane protein porin 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMX3]
SUBAcon: [cytosol,mitochondrion]
SUBAcon: [cytosol,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.