Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_11s0016g03070.t01 | |
| VIT_11s0037g00990.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G01280.1 | VIT_11s0016g03070.t01 | AT4G29130.1 | 17965176 |
| AT3G01280.1 | VIT_11s0037g00990.t01 | AT4G30490.1 | 19523112 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH18503 | Soybean | mitochondrion | 81.16 | 81.16 |
| KRG93501 | Soybean | endoplasmic reticulum, mitochondrion | 81.16 | 81.16 |
| KRH40133 | Soybean | mitochondrion | 80.07 | 80.07 |
| KRH01127 | Soybean | mitochondrion | 79.35 | 79.35 |
| Solyc02g067460.2.1 | Tomato | plastid | 78.99 | 78.99 |
| PGSC0003DMT400017754 | Potato | cytosol | 78.62 | 78.62 |
| PGSC0003DMT400005245 | Potato | cytosol | 78.62 | 78.62 |
| VIT_01s0026g01650.t01 | Wine grape | cytosol | 78.62 | 78.62 |
| CDY66736 | Canola | cytosol, mitochondrion, nucleus | 75.36 | 75.36 |
| CDX91952 | Canola | mitochondrion | 73.91 | 73.91 |
| AT3G01280.1 | Thale cress | cytosol, mitochondrion | 73.55 | 73.55 |
| CDY68122 | Canola | cytosol | 73.19 | 73.19 |
| Bra001010.1-P | Field mustard | mitochondrion | 73.19 | 73.19 |
| CDX74294 | Canola | cytosol, mitochondrion | 72.83 | 72.83 |
| Bra006664.1-P | Field mustard | cytosol | 72.83 | 72.83 |
| CDY28690 | Canola | cytosol | 72.1 | 72.1 |
| Bra040507.1-P | Field mustard | cytosol | 72.1 | 72.1 |
| CDY59668 | Canola | cytosol | 70.29 | 70.29 |
| CDY63765 | Canola | cytosol | 69.93 | 69.93 |
| CDY69321 | Canola | cytosol | 69.2 | 69.2 |
| Bra008723.1-P | Field mustard | cytosol | 69.2 | 69.2 |
| CDY59666 | Canola | cytosol | 19.93 | 67.9 |
| AT5G15090.2 | Thale cress | cytosol, mitochondrion | 64.86 | 65.33 |
| Solyc03g058920.2.1 | Tomato | plastid | 77.54 | 63.31 |
| Bra039131.1-P | Field mustard | cytosol, golgi, mitochondrion | 73.91 | 62.58 |
| VIT_07s0129g00100.t01 | Wine grape | cytosol | 21.74 | 52.63 |
| CDY70638 | Canola | cytosol, mitochondrion | 47.1 | 52.0 |
| VIT_07s0129g00170.t01 | Wine grape | cytosol | 51.81 | 51.81 |
| VIT_11s0052g01030.t01 | Wine grape | cytosol | 47.46 | 47.29 |
| VIT_17s0000g05690.t01 | Wine grape | cytosol, mitochondrion | 40.58 | 43.41 |
| VIT_18s0001g09120.t01 | Wine grape | mitochondrion | 11.96 | 39.29 |
Protein Annotations
| EntrezGene:100264665 | wikigene:100264665 | Gene3D:2.40.160.10 | MapMan:24.4.1 | UniProt:A5BE54 | EMBL:AM449989 |
| EMBL:AM456269 | ProteinID:CAN61274 | ProteinID:CAN61274.1 | ProteinID:CAN67632 | ProteinID:CAN67632.1 | ProteinID:CBI22157 |
| ProteinID:CBI22157.3 | EMBL:FN595239 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0008308 | GO:GO:0015698 | GO:GO:0016020 | GO:GO:0055085 | GO:GO:0098656 | InterPro:IPR023614 |
| EntrezGene:LOC100264665 | wikigene:LOC100264665 | PFAM:PF01459 | ScanProsite:PS00558 | PANTHER:PTHR11743 | PANTHER:PTHR11743:SF31 |
| InterPro:Porin_Euk | InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf | TIGR:TC54007 | TIGR:TC60291 | UniParc:UPI0001520A34 |
| ArrayExpress:VIT_14s0108g00010 | EnsemblPlantsGene:VIT_14s0108g00010 | EnsemblPlants:VIT_14s0108g00010.t01 | unigene:Vvi.8959 | RefSeq:XP_002282471 | RefSeq:XP_002282471.1 |
Description
No Description!
Coordinates
chr14:-:28844435..28850458
Molecular Weight (calculated)
29377.8 Da
IEP (calculated)
9.062
GRAVY (calculated)
-0.149
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKGPGLYTE IGKKARDLLY KDYQSDHKLT ITSCSPTGVA ITSSGTKKGD IFVADVNTQL KNKNITTDVK IDTSSNLFVT VTVDEPAPGL KSIFNFKVPD
101: QRSGKVELQY LHDYAGISTS IGLTANPIVN FSGTIGTNVV ALGTDLSFDT KSGNFTKCNA GVSFCNADLI ASLTVNDKGD AVNASYFHSV NLLTNTAVGA
201: EVTHSFSTNQ NTLTLGAQHK LDPLTTVKAR VNNFGKASAL IQHEWRPRSL FTISGEVDTK AVDKTAKVGL ALALKP
101: QRSGKVELQY LHDYAGISTS IGLTANPIVN FSGTIGTNVV ALGTDLSFDT KSGNFTKCNA GVSFCNADLI ASLTVNDKGD AVNASYFHSV NLLTNTAVGA
201: EVTHSFSTNQ NTLTLGAQHK LDPLTTVKAR VNNFGKASAL IQHEWRPRSL FTISGEVDTK AVDKTAKVGL ALALKP
001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP
Arabidopsis Description
VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.