Factsheet for VIT_11s0052g01030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19015	Soybean	cytosol	70.76	70.76
KRH02881	Soybean	mitochondrion	70.04	70.04
CDX88625	Canola	cytosol	67.15	67.88
CDY11866	Canola	cytosol	66.79	67.52
Solyc07g008350.2.1	Tomato	cytosol, plastid	67.15	67.39
Bra006817.1-P	Field mustard	cytosol	66.43	67.15
AT5G57490.1	Thale cress	cytosol	65.34	66.06
Os03t0137500-01	Rice	mitochondrion	59.21	59.42
Bra002725.1-P	Field mustard	cytosol	33.94	59.12
GSMUA_Achr8P14200_001	Banana	extracellular, plasma membrane	63.54	58.86
EER95548	Sorghum	cytosol, mitochondrion	56.32	56.52
Zm00001d027580_P001	Maize	mitochondrion	54.87	53.71
CDY38301	Canola	cytosol	31.77	53.01
TraesCS4B01G336100.1	Wheat	nucleus	52.35	52.92
TraesCS4D01G331900.1	Wheat	nucleus	51.99	52.55
TraesCS5A01G505700.1	Wheat	nucleus	51.99	52.55
Zm00001d027578_P001	Maize	peroxisome	46.21	50.2
VIT_01s0026g01650.t01	Wine grape	cytosol	49.46	49.64
VIT_14s0108g00010.t01	Wine grape	cytosol	47.29	47.46
VIT_07s0129g00170.t01	Wine grape	cytosol	45.13	45.29
CDY25906	Canola	plasma membrane	53.79	44.35
VIT_07s0129g00100.t01	Wine grape	cytosol	18.05	43.86
Zm00001d048362_P002	Maize	endoplasmic reticulum, plasma membrane	53.07	39.62
VIT_18s0001g09120.t01	Wine grape	mitochondrion	10.47	34.52
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	30.69	32.95

Protein Annotations

EntrezGene:100242708	wikigene:100242708	Gene3D:2.40.160.10	MapMan:24.4.1	EMBL:AM436047	ProteinID:CAN64922
ProteinID:CAN64922.1	ProteinID:CBI17827	ProteinID:CBI17827.3	UniProt:D7SQ96	EMBL:FN594964	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005741	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0008308	GO:GO:0009605
GO:GO:0009607	GO:GO:0009617	GO:GO:0016020	GO:GO:0055085	InterPro:IPR023614	EntrezGene:LOC100242708
wikigene:LOC100242708	PFAM:PF01459	PANTHER:PTHR11743	PANTHER:PTHR11743:SF48	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf
TIGR:TC65731	UniParc:UPI00015CC3D4	ArrayExpress:VIT_11s0052g01030	EnsemblPlantsGene:VIT_11s0052g01030	EnsemblPlants:VIT_11s0052g01030.t01	unigene:Vvi.14823
RefSeq:XP_002272180	RefSeq:XP_002272180.1	RefSeq:XP_019078733.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:-:18708857..18714197

Molecular Weight (calculated)

29725.5 Da

IEP (calculated)

9.220

GRAVY (calculated)

-0.247

Length

277 amino acids

Sequence
(BLAST)

001: MGNGPAPFSD IGKKTRDLLN KDYNFDHKFT LLMQSPGGMG VTATGWKKDQ IFFGDVSTLY KSGNTTVDLK LDTHSNVSTK VTAHDILPCT KVACSFKIPD
101: HKSGKLDVQY LHPHAAIDSS IGLNPTPLLE LSAAIGSKDL SLGGEVGLNT ASASFTKYNA GIGINKPDFS VAVLLTDKGE TLKASYIHSV NPPYGGTTVA
201: AELTHKFNTY ENSFTIGSAH VVDPYTMVKT RLSNNGKFAM LCQREWRPKS LITVSGEYDP KANNGATKLG LALALKP

Best Arabidopsis Sequence Match ( AT5G57490.1 )
(BLAST)

001: MGSSPAPFAD IGKKAKDLLN KDYIFDHKFT LTMLSATGTE FVATGLKKDD FFFGDISTLY KGQNTIVDLK IDSHSSVSTK VTLKNLLPSA KAVISFKIPD
101: HKSGKLDVQY VHPHATLNSS IGLNPTPLLD LSATIGSQNV CLGGEVSFDT ASSSLTKYNA GIGFNNQGVS AALILEDKGE SLRATYVHTV NPTTSFGAEL
201: IRRFSNYNNS FTVGSSHSVD QFTVVKTRFS NSGKAGMVVQ REWRPKSHIT FSAEYDSKAV TSSPKLGLAL ALKP

Arabidopsis Description

VDAC4Mitochondrial outer membrane protein porin 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.