Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11866 | Canola | cytosol | 89.05 | 89.05 |
| CDX88625 | Canola | cytosol | 89.05 | 89.05 |
| Bra006817.1-P | Field mustard | cytosol | 88.32 | 88.32 |
| Bra002725.1-P | Field mustard | cytosol | 42.7 | 73.58 |
| VIT_11s0052g01030.t01 | Wine grape | cytosol | 66.06 | 65.34 |
| CDY38301 | Canola | cytosol | 38.32 | 63.25 |
| Solyc07g008350.2.1 | Tomato | cytosol, plastid | 60.95 | 60.51 |
| KRH19015 | Soybean | cytosol | 60.95 | 60.29 |
| KRH02881 | Soybean | mitochondrion | 60.22 | 59.57 |
| CDY25906 | Canola | plasma membrane | 70.07 | 57.14 |
| Os03t0137500-01 | Rice | mitochondrion | 54.01 | 53.62 |
| EER95548 | Sorghum | cytosol, mitochondrion | 52.55 | 52.17 |
| GSMUA_Achr8P14200_001 | Banana | extracellular, plasma membrane | 56.2 | 51.51 |
| Zm00001d027580_P001 | Maize | mitochondrion | 51.46 | 49.82 |
| TraesCS5A01G505700.1 | Wheat | nucleus | 49.63 | 49.63 |
| TraesCS4D01G331900.1 | Wheat | nucleus | 49.27 | 49.27 |
| TraesCS4B01G336100.1 | Wheat | nucleus | 48.91 | 48.91 |
| Zm00001d027578_P001 | Maize | peroxisome | 41.97 | 45.1 |
| AT5G15090.2 | Thale cress | cytosol, mitochondrion | 43.07 | 43.07 |
| AT3G01280.1 | Thale cress | cytosol, mitochondrion | 41.97 | 41.67 |
| AT3G49920.1 | Thale cress | cytosol | 32.85 | 39.82 |
| AT5G67500.1 | Thale cress | cytosol, mitochondrion, nucleus | 44.16 | 39.67 |
| Zm00001d048362_P002 | Maize | endoplasmic reticulum, plasma membrane | 48.91 | 36.12 |
| AT5G37610.1 | Thale cress | endoplasmic reticulum, extracellular | 14.96 | 25.15 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:24.4.1 | EntrezGene:835853 | UniProt:A0A178U8E7 | ProteinID:AED96907.1 | ArrayExpress:AT5G57490 |
| EnsemblPlantsGene:AT5G57490 | RefSeq:AT5G57490 | TAIR:AT5G57490 | RefSeq:AT5G57490-TAIR-G | EnsemblPlants:AT5G57490.1 | TAIR:AT5G57490.1 |
| EMBL:AY034928 | EMBL:AY059112 | EMBL:AY086306 | Unigene:At.23756 | ProteinID:BAB08784.1 | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0005741 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0008150 | GO:GO:0008308 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009617 | GO:GO:0015288 | GO:GO:0015698 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0040007 | GO:GO:0040008 | GO:GO:0046930 | GO:GO:0055085 | GO:GO:0098656 |
| InterPro:IPR023614 | RefSeq:NP_200557.1 | ProteinID:OAO90228.1 | PFAM:PF01459 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR11743 | PANTHER:PTHR11743:SF27 |
| InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf | UniProt:Q9FKM2 | UniParc:UPI000009C95D | Symbol:VDAC4 | : |
Description
VDAC4Mitochondrial outer membrane protein porin 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM2]
Coordinates
chr5:-:23283617..23286005
Molecular Weight (calculated)
29507.0 Da
IEP (calculated)
9.759
GRAVY (calculated)
-0.166
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSPAPFAD IGKKAKDLLN KDYIFDHKFT LTMLSATGTE FVATGLKKDD FFFGDISTLY KGQNTIVDLK IDSHSSVSTK VTLKNLLPSA KAVISFKIPD
101: HKSGKLDVQY VHPHATLNSS IGLNPTPLLD LSATIGSQNV CLGGEVSFDT ASSSLTKYNA GIGFNNQGVS AALILEDKGE SLRATYVHTV NPTTSFGAEL
201: IRRFSNYNNS FTVGSSHSVD QFTVVKTRFS NSGKAGMVVQ REWRPKSHIT FSAEYDSKAV TSSPKLGLAL ALKP
101: HKSGKLDVQY VHPHATLNSS IGLNPTPLLD LSATIGSQNV CLGGEVSFDT ASSSLTKYNA GIGFNNQGVS AALILEDKGE SLRATYVHTV NPTTSFGAEL
201: IRRFSNYNNS FTVGSSHSVD QFTVVKTRFS NSGKAGMVVQ REWRPKSHIT FSAEYDSKAV TSSPKLGLAL ALKP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.