Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08723 | Canola | cytosol, nucleus, plastid | 80.98 | 89.49 |
| CDY36497 | Canola | cytosol, nucleus, plastid | 80.66 | 89.13 |
| CDY18662 | Canola | cytosol | 80.66 | 89.13 |
| Bra024444.1-P | Field mustard | cytosol, nucleus, plastid | 80.66 | 89.13 |
| Bra037844.1-P | Field mustard | cytosol, mitochondrion, nucleus | 80.33 | 88.77 |
| CDX81312 | Canola | cytosol, mitochondrion, nucleus | 80.0 | 88.41 |
| Bra031839.1-P | Field mustard | mitochondrion | 18.03 | 85.94 |
| CDY43581 | Canola | mitochondrion | 17.7 | 84.38 |
| AT3G49920.1 | Thale cress | cytosol | 52.46 | 70.8 |
| VIT_07s0129g00170.t01 | Wine grape | cytosol | 63.61 | 70.29 |
| VIT_07s0129g00100.t01 | Wine grape | cytosol | 26.23 | 70.18 |
| KRH28358 | Soybean | mitochondrion | 63.28 | 69.93 |
| KRH77123 | Soybean | endoplasmic reticulum, mitochondrion | 62.3 | 68.84 |
| PGSC0003DMT400023484 | Potato | cytosol | 60.33 | 67.15 |
| Solyc03g044010.2.1 | Tomato | cytosol, nucleus, unclear | 60.0 | 66.79 |
| Solyc02g092440.2.1 | Tomato | plastid | 60.0 | 66.3 |
| PGSC0003DMT400055247 | Potato | cytosol | 60.0 | 66.3 |
| GSMUA_AchrUn_... | Banana | cytosol | 57.05 | 63.27 |
| TraesCS4D01G258900.1 | Wheat | cytosol | 55.08 | 61.09 |
| HORVU4Hr1G070150.3 | Barley | plasma membrane | 55.08 | 60.65 |
| TraesCS4A01G046000.1 | Wheat | plastid | 55.08 | 60.65 |
| TraesCS4B01G259600.1 | Wheat | cytosol | 55.08 | 60.65 |
| GSMUA_Achr5P08710_001 | Banana | cytosol | 53.44 | 59.27 |
| EER92681 | Sorghum | mitochondrion | 52.46 | 58.18 |
| Zm00001d048149_P002 | Maize | mitochondrion | 52.46 | 58.18 |
| GSMUA_Achr7P26190_001 | Banana | cytosol | 52.13 | 57.82 |
| Zm00001d028102_P001 | Maize | mitochondrion | 51.48 | 57.09 |
| Os03t0202200-01 | Rice | mitochondrion, nucleus, plasma membrane, plastid | 50.16 | 55.23 |
| AT3G01280.1 | Thale cress | cytosol, mitochondrion | 43.28 | 47.83 |
| AT5G15090.2 | Thale cress | cytosol, mitochondrion | 41.97 | 46.72 |
| AT5G57490.1 | Thale cress | cytosol | 39.67 | 44.16 |
| AT5G37610.1 | Thale cress | endoplasmic reticulum, extracellular | 12.46 | 23.31 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:24.4.1 | EntrezGene:836886 | UniProt:A0A2H1ZE94 | ProteinID:AED98352.2 | ArrayExpress:AT5G67500 |
| EnsemblPlantsGene:AT5G67500 | RefSeq:AT5G67500 | TAIR:AT5G67500 | RefSeq:AT5G67500-TAIR-G | EnsemblPlants:AT5G67500.1 | TAIR:AT5G67500.1 |
| Unigene:At.7628 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0005741 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0055085 | InterPro:IPR023614 |
| RefSeq:NP_001318898.1 | PFAM:PF01459 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR11743 | PANTHER:PTHR11743:SF29 | InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf |
| UniParc:UPI0008490218 | Symbol:VDAC2 | SEG:seg | : | : | : |
Description
VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
Coordinates
chr5:+:26935160..26937650
Molecular Weight (calculated)
33132.3 Da
IEP (calculated)
9.302
GRAVY (calculated)
-0.212
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRNND RRIQIKTVST TSQFGLVDQL LVIEVHSQRR
301: FSQYC
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRNND RRIQIKTVST TSQFGLVDQL LVIEVHSQRR
301: FSQYC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.