Factsheet for PGSC0003DMT400055247

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g092440.2.1	Tomato	plastid	98.91	98.91
PGSC0003DMT400023484	Potato	cytosol	89.13	89.78
VIT_07s0129g00170.t01	Wine grape	cytosol	79.35	79.35
VIT_07s0129g00100.t01	Wine grape	cytosol	31.88	77.19
Bra031839.1-P	Field mustard	mitochondrion	17.75	76.56
KRH28358	Soybean	mitochondrion	75.72	75.72
KRH77123	Soybean	endoplasmic reticulum, mitochondrion	75.0	75.0
CDY43581	Canola	mitochondrion	17.39	75.0
CDY18662	Canola	cytosol	68.84	68.84
GSMUA_AchrUn_...	Banana	cytosol	68.48	68.73
CDY36497	Canola	cytosol, nucleus, plastid	68.48	68.48
Bra037844.1-P	Field mustard	cytosol, mitochondrion, nucleus	68.48	68.48
CDY08723	Canola	cytosol, nucleus, plastid	68.12	68.12
CDX81312	Canola	cytosol, mitochondrion, nucleus	68.12	68.12
GSMUA_Achr7P26190_001	Banana	cytosol	67.75	68.0
Bra024444.1-P	Field mustard	cytosol, nucleus, plastid	67.75	67.75
EER92681	Sorghum	mitochondrion	66.67	66.91
Zm00001d048149_P002	Maize	mitochondrion	66.67	66.91
Zm00001d028102_P001	Maize	mitochondrion	66.3	66.55
Bra012915.1-P	Field mustard	cytosol, mitochondrion, nucleus	66.3	66.3
GSMUA_Achr5P08710_001	Banana	cytosol	65.58	65.82
TraesCS4D01G258900.1	Wheat	cytosol	65.58	65.82
HORVU4Hr1G070150.3	Barley	plasma membrane	65.94	65.7
TraesCS4A01G046000.1	Wheat	plastid	65.58	65.34
TraesCS4B01G259600.1	Wheat	cytosol	65.58	65.34
Os03t0202200-01	Rice	mitochondrion, nucleus, plasma membrane, plastid	65.22	64.98
CDY02103	Canola	cytosol, mitochondrion, nucleus	64.86	64.86
AT5G67500.1	Thale cress	cytosol, mitochondrion, nucleus	66.3	60.0
AT3G49920.1	Thale cress	cytosol	48.91	59.73
PGSC0003DMT400017754	Potato	cytosol	52.54	52.54
PGSC0003DMT400005245	Potato	cytosol	51.45	51.45
PGSC0003DMT400002261	Potato	mitochondrion	50.72	50.72
CDY23028	Canola	mitochondrion	32.61	41.67
PGSC0003DMT400065213	Potato	cytosol	27.9	32.22

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	ProteinID:ABB16970	ProteinID:ABB16970.1	ProteinID:CAA63968	ProteinID:CAA63968.1
EMBL:DQ228321	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0055085	InterPro:IPR023614
PFAM:PF01459	EnsemblPlantsGene:PGSC0003DMG400021448	PGSC:PGSC0003DMG400021448	EnsemblPlants:PGSC0003DMT400055247	PANTHER:PTHR11743	PANTHER:PTHR11743:SF29
InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniProt:Q5CZ53	UniParc:UPI00004CF87F	EMBL:X94305	:

Description

Pom30 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021448]

Coordinates

chr2:-:42763849..42767776

Molecular Weight (calculated)

29322.0 Da

IEP (calculated)

9.291

GRAVY (calculated)

-0.122

Length

276 amino acids

Sequence
(BLAST)

001: MSKGPGLFAD IGKKARDLLT KDYISDQKLS ISTYSDTGVA LTSTAVKKGG LSTGDVGAQY KYKNTLIDVK VDTASNISTT LTLNDIAPST KTIASLKFPD
101: YSSGKLEVQY YHHHAAFSTA VGLKQSPIVD LSVTLGTPTF AIGAEASYET AEGKLAKYTA GISVTKPDSC AAIILGDKGD TIKASYIHHL DELKKSAAVG
201: EITRRFSTNE NTFTVGGSYA VDNLTIVKLK LNNHGNLGAL LQHELIPKSL LTISSEFDTK ALEKTPKFGV ALALKP

Best Arabidopsis Sequence Match ( AT5G67500.3 )
(BLAST)

001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP

Arabidopsis Description

VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.