Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012915.1-P | Field mustard | cytosol, mitochondrion, nucleus | 78.32 | 64.13 |
| CDY02103 | Canola | cytosol, mitochondrion, nucleus | 76.55 | 62.68 |
| VIT_07s0129g00170.t01 | Wine grape | cytosol | 65.49 | 53.62 |
| AT5G67500.1 | Thale cress | cytosol, mitochondrion, nucleus | 70.8 | 52.46 |
| KRH28358 | Soybean | mitochondrion | 61.95 | 50.72 |
| KRH77123 | Soybean | endoplasmic reticulum, mitochondrion | 61.95 | 50.72 |
| TraesCS4D01G258900.1 | Wheat | cytosol | 60.62 | 49.82 |
| TraesCS4B01G259600.1 | Wheat | cytosol | 60.62 | 49.46 |
| TraesCS4A01G046000.1 | Wheat | plastid | 60.62 | 49.46 |
| HORVU4Hr1G070150.3 | Barley | plasma membrane | 60.62 | 49.46 |
| VIT_07s0129g00100.t01 | Wine grape | cytosol | 24.78 | 49.12 |
| PGSC0003DMT400055247 | Potato | cytosol | 59.73 | 48.91 |
| Solyc02g092440.2.1 | Tomato | plastid | 58.85 | 48.19 |
| PGSC0003DMT400023484 | Potato | cytosol | 57.96 | 47.81 |
| Solyc03g044010.2.1 | Tomato | cytosol, nucleus, unclear | 57.96 | 47.81 |
| GSMUA_Achr5P08710_001 | Banana | cytosol | 57.52 | 47.27 |
| GSMUA_AchrUn_... | Banana | cytosol | 56.64 | 46.55 |
| Zm00001d048149_P002 | Maize | mitochondrion | 55.75 | 45.82 |
| Zm00001d028102_P001 | Maize | mitochondrion | 55.75 | 45.82 |
| EER92681 | Sorghum | mitochondrion | 55.75 | 45.82 |
| Os03t0202200-01 | Rice | mitochondrion, nucleus, plasma membrane, plastid | 54.42 | 44.4 |
| GSMUA_Achr7P26190_001 | Banana | cytosol | 53.54 | 44.0 |
| AT3G01280.1 | Thale cress | cytosol, mitochondrion | 45.13 | 36.96 |
| AT5G15090.2 | Thale cress | cytosol, mitochondrion | 43.36 | 35.77 |
| AT5G57490.1 | Thale cress | cytosol | 39.82 | 32.85 |
| CDY23028 | Canola | mitochondrion | 30.97 | 32.41 |
| AT5G37610.1 | Thale cress | endoplasmic reticulum, extracellular | 13.27 | 18.4 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:24.4.1 | EntrezGene:824154 | ProteinID:AEE78606.1 | ArrayExpress:AT3G49920 | EnsemblPlantsGene:AT3G49920 |
| RefSeq:AT3G49920 | TAIR:AT3G49920 | RefSeq:AT3G49920-TAIR-G | EnsemblPlants:AT3G49920.1 | TAIR:AT3G49920.1 | ProteinID:CAB66930.1 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0005741 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0008150 | GO:GO:0015288 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046930 | GO:GO:0055085 | InterPro:IPR023614 | RefSeq:NP_190561.1 |
| PFAM:PF01459 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0007611 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009030 | PO:PO:0009046 | PO:PO:0025022 | PANTHER:PTHR11743 |
| PANTHER:PTHR11743:SF29 | InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf | UniProt:Q9M2W6 | UniParc:UPI000009EF5D | Symbol:VDAC5 |
Description
VDAC5Putative mitochondrial outer membrane protein porin 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2W6]
Coordinates
chr3:-:18505836..18507699
Molecular Weight (calculated)
24632.3 Da
IEP (calculated)
9.604
GRAVY (calculated)
-0.222
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKGPGLFAD IGKYAKDLLT RDYSTDQKFS ISTNSVSGVA LTSTALKNGV LHAANVATQY KYRNTFFDVK IDTDFNVKSL VYPMNKFVSI DHNTLTGYDT
101: TSRTFTKYNV GVSVTKPDQC VSIILGDKGD SIKASYVYYL DESTRSATVG EVIRKISTNE TTVTVGGLYA VDHLTNVKAK LNSNGKFGAL LQHEGLPKSI
201: VTISGEIDTK TLDKYPRLGL SLSLKP
101: TSRTFTKYNV GVSVTKPDQC VSIILGDKGD SIKASYVYYL DESTRSATVG EVIRKISTNE TTVTVGGLYA VDHLTNVKAK LNSNGKFGAL LQHEGLPKSI
201: VTISGEIDTK TLDKYPRLGL SLSLKP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.