Factsheet for GSMUA_Achr5P08710_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	83.27	83.27
GSMUA_Achr7P26190_001	Banana	cytosol	76.0	76.0
Os03t0202200-01	Rice	mitochondrion, nucleus, plasma membrane, plastid	69.45	68.95
EER92681	Sorghum	mitochondrion	68.36	68.36
Zm00001d028102_P001	Maize	mitochondrion	68.0	68.0
TraesCS4D01G258900.1	Wheat	cytosol	67.27	67.27
Zm00001d048149_P002	Maize	mitochondrion	67.27	67.27
Bra031839.1-P	Field mustard	mitochondrion	15.64	67.19
CDY43581	Canola	mitochondrion	15.64	67.19
TraesCS4A01G046000.1	Wheat	plastid	66.91	66.43
TraesCS4B01G259600.1	Wheat	cytosol	66.91	66.43
HORVU4Hr1G070150.3	Barley	plasma membrane	66.55	66.06
VIT_07s0129g00170.t01	Wine grape	cytosol	65.82	65.58
PGSC0003DMT400055247	Potato	cytosol	65.82	65.58
Solyc02g092440.2.1	Tomato	plastid	65.45	65.22
KRH28358	Soybean	mitochondrion	65.45	65.22
VIT_07s0129g00100.t01	Wine grape	cytosol	26.91	64.91
KRH77123	Soybean	endoplasmic reticulum, mitochondrion	64.73	64.49
PGSC0003DMT400023484	Potato	cytosol	62.91	63.14
Solyc03g044010.2.1	Tomato	cytosol, nucleus, unclear	62.18	62.41
CDY18662	Canola	cytosol	61.82	61.59
Bra037844.1-P	Field mustard	cytosol, mitochondrion, nucleus	61.45	61.23
CDY08723	Canola	cytosol, nucleus, plastid	61.09	60.87
CDX81312	Canola	cytosol, mitochondrion, nucleus	61.09	60.87
CDY36497	Canola	cytosol, nucleus, plastid	60.73	60.51
Bra024444.1-P	Field mustard	cytosol, nucleus, plastid	60.73	60.51
Bra012915.1-P	Field mustard	cytosol, mitochondrion, nucleus	59.64	59.42
CDY02103	Canola	cytosol, mitochondrion, nucleus	58.55	58.33
AT3G49920.1	Thale cress	cytosol	47.27	57.52
AT5G67500.1	Thale cress	cytosol, mitochondrion, nucleus	59.27	53.44
KRH15450	Soybean	cytosol	52.0	51.62
KRH05595	Soybean	plastid	44.73	49.0
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	47.64	47.64
GSMUA_Achr7P00060_001	Banana	cytosol	47.27	47.27
GSMUA_Achr6P04840_001	Banana	cytosol	46.91	47.25
GSMUA_Achr7P08830_001	Banana	cytosol	45.82	45.82
GSMUA_Achr3P20500_001	Banana	cytosol	45.82	45.82
VIT_18s0001g09120.t01	Wine grape	mitochondrion	13.09	42.86
GSMUA_Achr8P14200_001	Banana	extracellular, plasma membrane	45.45	41.81
CDY23028	Canola	mitochondrion	30.55	38.89

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150
GO:GO:0008308	GO:GO:0015698	GO:GO:0016020	GO:GO:0055085	GO:GO:0098656	EnsemblPlantsGene:GSMUA_Achr5G08710_001
EnsemblPlants:GSMUA_Achr5P08710_001	EnsemblPlants:GSMUA_Achr5T08710_001	InterPro:IPR023614	UniProt:M0SWV0	PFAM:PF01459	PRINTS:PR00185
ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF29	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf
UniParc:UPI000296BFDB	:	:	:	:	:

Description

Outer plastidial membrane protein porin [Source:GMGC_GENE;Acc:GSMUA_Achr5G08710_001]

Coordinates

chr5:-:6317810..6322170

Molecular Weight (calculated)

29319.0 Da

IEP (calculated)

9.507

GRAVY (calculated)

-0.135

Length

275 amino acids

Sequence
(BLAST)

001: MKGPGLFSDI GKNAKDLLTK DYTCDQKLTI STTSASGVAL TSSAVKKGGL YTSDIGSLYK YKNTLVNVKV DTDSNISTTL IISEILPSTK AIASIKFPDY
101: NSGKLEVWYL HHHASLASVM SLKQSPVVEL SGTVGAQGLA FGAEAGFDSA SGTFTKYGAG VSLTKAEYDA SVIMVDKGDT LRASYVYHLD EMQKSTVVAE
201: FVRRFSTNEN TVTVGGQHAL DSKTTVKARL NNSGKLGALL QHELRPKSTL TISGELDTKA LERTPRLGLA LALKP

Best Arabidopsis Sequence Match ( AT5G67500.3 )
(BLAST)

001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP

Arabidopsis Description

VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.