Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G046000.1 | Wheat | plastid | 100.0 | 100.0 |
| TraesCS4D01G258900.1 | Wheat | cytosol | 98.92 | 99.64 |
| HORVU4Hr1G070150.3 | Barley | plasma membrane | 97.83 | 97.83 |
| Os03t0202200-01 | Rice | mitochondrion, nucleus, plasma membrane, plastid | 82.31 | 82.31 |
| Zm00001d048149_P002 | Maize | mitochondrion | 81.59 | 82.18 |
| EER92681 | Sorghum | mitochondrion | 81.23 | 81.82 |
| Zm00001d028102_P001 | Maize | mitochondrion | 80.87 | 81.45 |
| Bra031839.1-P | Field mustard | mitochondrion | 16.61 | 71.88 |
| CDY43581 | Canola | mitochondrion | 16.25 | 70.31 |
| GSMUA_Achr7P26190_001 | Banana | cytosol | 68.59 | 69.09 |
| GSMUA_AchrUn_... | Banana | cytosol | 67.87 | 68.36 |
| KRH28358 | Soybean | mitochondrion | 67.15 | 67.39 |
| KRH77123 | Soybean | endoplasmic reticulum, mitochondrion | 67.15 | 67.39 |
| GSMUA_Achr5P08710_001 | Banana | cytosol | 66.43 | 66.91 |
| VIT_07s0129g00100.t01 | Wine grape | cytosol | 27.44 | 66.67 |
| VIT_07s0129g00170.t01 | Wine grape | cytosol | 65.7 | 65.94 |
| PGSC0003DMT400055247 | Potato | cytosol | 65.34 | 65.58 |
| Solyc02g092440.2.1 | Tomato | plastid | 64.62 | 64.86 |
| PGSC0003DMT400023484 | Potato | cytosol | 63.54 | 64.23 |
| Solyc03g044010.2.1 | Tomato | cytosol, nucleus, unclear | 63.18 | 63.87 |
| CDY18662 | Canola | cytosol | 63.54 | 63.77 |
| Bra037844.1-P | Field mustard | cytosol, mitochondrion, nucleus | 63.18 | 63.41 |
| CDX81312 | Canola | cytosol, mitochondrion, nucleus | 62.82 | 63.04 |
| CDY08723 | Canola | cytosol, nucleus, plastid | 62.45 | 62.68 |
| CDY36497 | Canola | cytosol, nucleus, plastid | 62.09 | 62.32 |
| Bra024444.1-P | Field mustard | cytosol, nucleus, plastid | 62.09 | 62.32 |
| Bra012915.1-P | Field mustard | cytosol, mitochondrion, nucleus | 60.65 | 60.87 |
| AT3G49920.1 | Thale cress | cytosol | 49.46 | 60.62 |
| CDY02103 | Canola | cytosol, mitochondrion, nucleus | 59.57 | 59.78 |
| AT5G67500.1 | Thale cress | cytosol, mitochondrion, nucleus | 60.65 | 55.08 |
| KRH15450 | Soybean | cytosol | 53.79 | 53.79 |
| KRH05595 | Soybean | plastid | 47.65 | 52.59 |
| TraesCS5B01G189000.1 | Wheat | mitochondrion | 45.49 | 45.82 |
| TraesCS3B01G241200.1 | Wheat | cytosol, golgi, unclear | 43.32 | 43.64 |
| TraesCS1B01G374200.1 | Wheat | golgi, unclear | 45.13 | 43.4 |
| TraesCS4B01G336100.1 | Wheat | nucleus | 40.43 | 40.88 |
| VIT_18s0001g09120.t01 | Wine grape | mitochondrion | 12.27 | 40.48 |
| TraesCS3B01G276600.1 | Wheat | cytosol, plasma membrane, plastid | 41.16 | 39.86 |
| CDY23028 | Canola | mitochondrion | 29.96 | 38.43 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:24.4.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0008308 | GO:GO:0016020 | GO:GO:0055085 | GO:GO:0098656 | InterPro:IPR023614 | PFAM:PF01459 |
| ScanProsite:PS00558 | PANTHER:PTHR11743 | PANTHER:PTHR11743:SF29 | InterPro:Porin_Euk | InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf |
| EnsemblPlantsGene:TraesCS4B01G259600 | EnsemblPlants:TraesCS4B01G259600.1 | TIGR:cd07306 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4B:-:526940235..526943286
Molecular Weight (calculated)
29445.2 Da
IEP (calculated)
9.799
GRAVY (calculated)
-0.121
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMKGPGLFT DIGKKAKDLL TRDYTYDQKL SVSTVSSSGV AVTSTAVKKG GLYSLDVASA YKYKNNLVDV KVDTESNIST TLTVLDVLPS TKLVTSVKFP
101: DYNAGKVEVQ YFHDHATFAA AVGMKPSPVV DFSLVVGPKG LAFGGEAGFD TSSGKFTKYT GGFSVTKPDF HASAILADKG DTIKVSGVYH LDEKQKASAV
201: AEFTRKLSTN ENTLTVGGLY TVDPQTAVKA RLNNTGKLAA LLQHEVKPKS LLTISGEFDT KALDRAPKFG LSLALKP
101: DYNAGKVEVQ YFHDHATFAA AVGMKPSPVV DFSLVVGPKG LAFGGEAGFD TSSGKFTKYT GGFSVTKPDF HASAILADKG DTIKVSGVYH LDEKQKASAV
201: AEFTRKLSTN ENTLTVGGLY TVDPQTAVKA RLNNTGKLAA LLQHEVKPKS LLTISGEFDT KALDRAPKFG LSLALKP
001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP
Arabidopsis Description
VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.