Factsheet for TraesCS3B01G276600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, plasma membrane, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G247900.1	Wheat	cytosol	95.45	84.78
TraesCS3A01G247900.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	94.76	81.87
HORVU3Hr1G067610.2	Barley	mitochondrion	78.67	64.84
EES03523	Sorghum	cytosol	58.04	59.93
Os01t0715500-00	Rice	cytosol, mitochondrion, plasma membrane	43.01	58.85
GSMUA_Achr7P00060_001	Banana	cytosol	56.29	58.55
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	56.29	58.55
TraesCS5B01G189000.1	Wheat	mitochondrion	55.24	57.45
GSMUA_Achr3P20500_001	Banana	cytosol	52.8	54.91
TraesCS1B01G374200.1	Wheat	golgi, unclear	54.9	54.51
Zm00001d043661_P001	Maize	cytosol	51.4	53.07
TraesCS3B01G241200.1	Wheat	cytosol, golgi, unclear	50.35	52.36
TraesCS4B01G259600.1	Wheat	cytosol	39.86	41.16
TraesCS4B01G336100.1	Wheat	nucleus	36.01	37.59
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	30.07	33.33
KRH56957	Soybean	cytosol	28.32	33.06
KRH03426	Soybean	cytosol	27.97	32.65
KRH63406	Soybean	cytosol	27.97	32.26
KRH54504	Soybean	cytosol	27.27	31.45
Solyc03g113210.2.1	Tomato	cytosol	25.17	30.51
PGSC0003DMT400065213	Potato	cytosol	25.17	30.13
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	13.99	24.54
CDY01000	Canola	endoplasmic reticulum, plasma membrane	22.03	17.45
CDY39954	Canola	extracellular	11.54	15.57

Protein Annotations

EnsemblPlants:TraesCS3B01G276600.1	EnsemblPlantsGene:TraesCS3B01G276600	Gene3D:2.40.160.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0055085	InterPro:IPR023614	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	PANTHER:PTHR11743	PANTHER:PTHR11743:SF30
PFAM:PF01459	SEG:seg	TIGR:cd07306	MapMan:24.4.1	:	:

Description

No Description!

Coordinates

chr3B:+:446690381..446693671

Molecular Weight (calculated)

30711.4 Da

IEP (calculated)

9.269

GRAVY (calculated)

-0.198

Length

286 amino acids

Sequence
(BLAST)

001: MAAQGGAPPK AATGPGLYSE IGKKARDLLY KDFTTDQKLT LTTYAANGTA ITATSTTKKE AILNEIQTQF KYNNVKVDVK ANSDSQVLIT TTSEFRYIPG
101: LKRIVTIPLT NHTPAKAELQ YFHDYAGISV GFGLHSKPLI NVSALVGNKA LALGADVAYD SATGDFTKCN FGASFTNDDL YAALMLNNKG DSLSVSYYQM
201: VSNSQAAAGG EVSHSLSSNE TTTTLGFQYS LDPLTTTKVR YDNHGMVSAL IQHELRPKSL LTISSKFDTK AIEKSSKIGL SLLLKP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.