Factsheet for TraesCS4B01G336100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G331900.1	Wheat	nucleus	99.64	99.64
TraesCS5A01G505700.1	Wheat	nucleus	99.27	99.27
Os03t0137500-01	Rice	mitochondrion	78.83	78.26
EER95548	Sorghum	cytosol, mitochondrion	78.1	77.54
Zm00001d027580_P001	Maize	mitochondrion	78.1	75.62
Zm00001d027578_P001	Maize	peroxisome	64.6	69.41
GSMUA_Achr8P14200_001	Banana	extracellular, plasma membrane	60.95	55.85
KRH02881	Soybean	mitochondrion	55.11	54.51
Zm00001d048362_P002	Maize	endoplasmic reticulum, plasma membrane	73.36	54.18
Solyc07g008350.2.1	Tomato	cytosol, plastid	54.01	53.62
KRH19015	Soybean	cytosol	54.01	53.43
VIT_11s0052g01030.t01	Wine grape	cytosol	52.92	52.35
CDY11866	Canola	cytosol	52.19	52.19
CDX88625	Canola	cytosol	51.82	51.82
Bra006817.1-P	Field mustard	cytosol	51.82	51.82
AT5G57490.1	Thale cress	cytosol	48.91	48.91
TraesCS5B01G189000.1	Wheat	mitochondrion	47.81	47.64
Bra002725.1-P	Field mustard	cytosol	25.18	43.4
TraesCS3B01G241200.1	Wheat	cytosol, golgi, unclear	41.61	41.45
TraesCS1B01G374200.1	Wheat	golgi, unclear	43.07	40.97
TraesCS4B01G259600.1	Wheat	cytosol	40.88	40.43
CDY38301	Canola	cytosol	22.99	37.95
TraesCS3B01G276600.1	Wheat	cytosol, plasma membrane, plastid	37.59	36.01
CDY25906	Canola	plasma membrane	41.24	33.63

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0005886	GO:GO:0006810
GO:GO:0008150	GO:GO:0008308	GO:GO:0009605	GO:GO:0009607	GO:GO:0009617	GO:GO:0016020
GO:GO:0055085	InterPro:IPR023614	PFAM:PF01459	PANTHER:PTHR11743	PANTHER:PTHR11743:SF27	InterPro:Porin_Euk/Tom40
InterPro:Porin_dom_sf	EnsemblPlantsGene:TraesCS4B01G336100	EnsemblPlants:TraesCS4B01G336100.1	TIGR:cd07306	:	:

Description

No Description!

Coordinates

chr4B:+:627938867..627944279

Molecular Weight (calculated)

29597.8 Da

IEP (calculated)

8.604

GRAVY (calculated)

-0.241

Length

274 amino acids

Sequence
(BLAST)

001: MSKGPVPFPS FGKKAKDLLY KDYNFDQKFS WSTTSESGLG ITASGVKFDE LFIGDIRVQH KSGRNTVDVT IDCDSKVSTA VTFDEVVPGL KTSFGFKVPD
101: QKSGKLDLQY LHDRFALNST IGLTSAPVIE LATTIGTNEL AVGAEVGFDS TSASVTKYNS GVSYTKDDFS AALQMADKGE TLKASYIHLF SPSSAVAAEV
201: THRLKTKENY FTIGSSHALD PSTTLKTRFS NSGKAGLLCR HEWRPKSYVT LSAEYDPKVV SSPSRFGVAV ALSP

Best Arabidopsis Sequence Match ( AT5G57490.1 )
(BLAST)

001: MGSSPAPFAD IGKKAKDLLN KDYIFDHKFT LTMLSATGTE FVATGLKKDD FFFGDISTLY KGQNTIVDLK IDSHSSVSTK VTLKNLLPSA KAVISFKIPD
101: HKSGKLDVQY VHPHATLNSS IGLNPTPLLD LSATIGSQNV CLGGEVSFDT ASSSLTKYNA GIGFNNQGVS AALILEDKGE SLRATYVHTV NPTTSFGAEL
201: IRRFSNYNNS FTVGSSHSVD QFTVVKTRFS NSGKAGMVVQ REWRPKSHIT FSAEYDSKAV TSSPKLGLAL ALKP

Arabidopsis Description

VDAC4Mitochondrial outer membrane protein porin 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.