Factsheet for Bra006817.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88625	Canola	cytosol	99.27	99.27
AT5G57490.1	Thale cress	cytosol	88.32	88.32
Bra002725.1-P	Field mustard	cytosol	47.45	81.76
VIT_11s0052g01030.t01	Wine grape	cytosol	67.15	66.43
Solyc07g008350.2.1	Tomato	cytosol, plastid	62.41	61.96
KRH02881	Soybean	mitochondrion	62.04	61.37
KRH19015	Soybean	cytosol	61.68	61.01
Os03t0137500-01	Rice	mitochondrion	55.11	54.71
TraesCS5A01G505700.1	Wheat	nucleus	52.55	52.55
GSMUA_Achr8P14200_001	Banana	extracellular, plasma membrane	57.3	52.51
TraesCS4D01G331900.1	Wheat	nucleus	52.19	52.19
EER95548	Sorghum	cytosol, mitochondrion	52.55	52.17
TraesCS4B01G336100.1	Wheat	nucleus	51.82	51.82
Zm00001d027580_P001	Maize	mitochondrion	52.19	50.53
Bra031839.1-P	Field mustard	mitochondrion	11.31	48.44
Bra008723.1-P	Field mustard	cytosol	48.18	47.83
Zm00001d027578_P001	Maize	peroxisome	42.7	45.88
Bra037844.1-P	Field mustard	cytosol, mitochondrion, nucleus	45.62	45.29
Bra024444.1-P	Field mustard	cytosol, nucleus, plastid	45.26	44.93
Bra012915.1-P	Field mustard	cytosol, mitochondrion, nucleus	44.89	44.57
Bra040507.1-P	Field mustard	cytosol	43.8	43.48
Bra006664.1-P	Field mustard	cytosol	43.43	43.12
Bra001010.1-P	Field mustard	mitochondrion	42.34	42.03
Bra039131.1-P	Field mustard	cytosol, golgi, mitochondrion	44.16	37.12
Zm00001d048362_P002	Maize	endoplasmic reticulum, plasma membrane	49.63	36.66

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	EnsemblPlantsGene:Bra006817	EnsemblPlants:Bra006817.1	EnsemblPlants:Bra006817.1-P	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008308	GO:GO:0015698	GO:GO:0016020
GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614	UniProt:M4CRH6	PFAM:PF01459	ScanProsite:PS00558
PANTHER:PTHR11743	PANTHER:PTHR11743:SF27	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniParc:UPI000253FCA3
SEG:seg	:	:	:	:	:

Description

AT5G57490 (E=2e-130) VDAC4, ATVDAC4 | VDAC4 (VOLTAGE DEPENDENT ANION CHANNEL 4); voltage-gated anion channel

Coordinates

chrA03:+:5181550..5182958

Molecular Weight (calculated)

29446.1 Da

IEP (calculated)

9.763

GRAVY (calculated)

-0.184

Length

274 amino acids

Sequence
(BLAST)

001: MGSSPAPFPD IGRKAKDLLN KDYIFDQKFT LTMLSATGTE FVATGLQKDD LFFGDISTLY KGQNTIVDLK IDSHSSVSTK VTVKNLMPSA KAVISFKIPD
101: HKSGKLDVQY VHPHATLNSS IGLNPTPLLD MSATIGSQTV SLGGEVGFDT ASSSLTKYNA GVSFNKPDFS AALMLEDKGE SLRATYVHTV NPTTSVGAEL
201: IRRFTNHANS FTIGSSYSVD PFTTVKTRLS NNGKAGMVVQ REWRPKSLIT LSAEYDSKAV NSSPKVGLAL ALKP

Best Arabidopsis Sequence Match ( AT5G57490.1 )
(BLAST)

001: MGSSPAPFAD IGKKAKDLLN KDYIFDHKFT LTMLSATGTE FVATGLKKDD FFFGDISTLY KGQNTIVDLK IDSHSSVSTK VTLKNLLPSA KAVISFKIPD
101: HKSGKLDVQY VHPHATLNSS IGLNPTPLLD LSATIGSQNV CLGGEVSFDT ASSSLTKYNA GIGFNNQGVS AALILEDKGE SLRATYVHTV NPTTSFGAEL
201: IRRFSNYNNS FTVGSSHSVD QFTVVKTRFS NSGKAGMVVQ REWRPKSHIT FSAEYDSKAV TSSPKLGLAL ALKP

Arabidopsis Description

VDAC4Mitochondrial outer membrane protein porin 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.