Factsheet for Bra024444.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08723	Canola	cytosol, nucleus, plastid	99.64	99.64
Bra031839.1-P	Field mustard	mitochondrion	22.46	96.88
Bra037844.1-P	Field mustard	cytosol, mitochondrion, nucleus	93.48	93.48
Bra012915.1-P	Field mustard	cytosol, mitochondrion, nucleus	82.61	82.61
AT5G67500.1	Thale cress	cytosol, mitochondrion, nucleus	89.13	80.66
VIT_07s0129g00170.t01	Wine grape	cytosol	72.1	72.1
KRH28358	Soybean	mitochondrion	71.01	71.01
KRH77123	Soybean	endoplasmic reticulum, mitochondrion	70.65	70.65
VIT_07s0129g00100.t01	Wine grape	cytosol	28.26	68.42
Solyc02g092440.2.1	Tomato	plastid	68.12	68.12
PGSC0003DMT400023484	Potato	cytosol	67.39	67.88
PGSC0003DMT400055247	Potato	cytosol	67.75	67.75
Solyc03g044010.2.1	Tomato	cytosol, nucleus, unclear	67.03	67.52
GSMUA_AchrUn_...	Banana	cytosol	64.86	65.09
TraesCS4D01G258900.1	Wheat	cytosol	62.32	62.55
TraesCS4B01G259600.1	Wheat	cytosol	62.32	62.09
TraesCS4A01G046000.1	Wheat	plastid	62.32	62.09
HORVU4Hr1G070150.3	Barley	plasma membrane	61.96	61.73
Zm00001d048149_P002	Maize	mitochondrion	60.87	61.09
GSMUA_Achr5P08710_001	Banana	cytosol	60.51	60.73
EER92681	Sorghum	mitochondrion	60.51	60.73
GSMUA_Achr7P26190_001	Banana	cytosol	59.78	60.0
Zm00001d028102_P001	Maize	mitochondrion	59.78	60.0
Os03t0202200-01	Rice	mitochondrion, nucleus, plasma membrane, plastid	57.25	57.04
Bra006664.1-P	Field mustard	cytosol	50.36	50.36
Bra040507.1-P	Field mustard	cytosol	50.0	50.0
Bra001010.1-P	Field mustard	mitochondrion	47.83	47.83
Bra008723.1-P	Field mustard	cytosol	46.01	46.01
Bra006817.1-P	Field mustard	cytosol	44.93	45.26
Bra039131.1-P	Field mustard	cytosol, golgi, mitochondrion	50.0	42.33
Bra002725.1-P	Field mustard	cytosol	22.1	38.36

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	EnsemblPlantsGene:Bra024444	EnsemblPlants:Bra024444.1	EnsemblPlants:Bra024444.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0055085	InterPro:IPR023614	UniProt:M4E6P0	PFAM:PF01459
PANTHER:PTHR11743	PANTHER:PTHR11743:SF29	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniParc:UPI000253EF17	SEG:seg

Description

AT5G67500 (E=1e-134) VDAC2, ATVDAC2 | VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2); voltage-gated anion channel

Coordinates

chrA06:-:15794521..15796060

Molecular Weight (calculated)

29462.0 Da

IEP (calculated)

9.329

GRAVY (calculated)

-0.150

Length

276 amino acids

Sequence
(BLAST)

001: MSKGPGLFSD IGKKAKDLLM RDYTSDHKFS ISTYSASGVA LTSTALKKGG VHAADVTTQY KYKNAVFDVK IDTDSTVLTT VTFTEILPST KAIVSFKVPD
101: NSSGKLEVQY FHDHAAVTAT AALKQNPLID ITATLGTPVI SFGAEAGYDT SSKTFTKYNA GISVTKPDAC ASIILGDKGD SIKASYLHHL DESKRSAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTSVKAK LNNHGTLGAL LQHEVLPKSL VTVSSEIDTK ALDRHPRFGL SLALKP

Best Arabidopsis Sequence Match ( AT5G67500.3 )
(BLAST)

001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP

Arabidopsis Description

VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.