Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
plastid: 22065420 mitochondrion: 27297264 plasma membrane: 27341663 mitochondrion: 29575040 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
msms PMID:
29575040
doi
Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92681 | Sorghum | mitochondrion | 96.36 | 96.36 |
| Zm00001d048149_P002 | Maize | mitochondrion | 96.36 | 96.36 |
| Os03t0202200-01 | Rice | mitochondrion, nucleus, plasma membrane, plastid | 85.82 | 85.2 |
| HORVU4Hr1G070150.3 | Barley | plasma membrane | 81.82 | 81.23 |
| TraesCS4D01G258900.1 | Wheat | cytosol | 81.09 | 81.09 |
| TraesCS4A01G046000.1 | Wheat | plastid | 81.45 | 80.87 |
| TraesCS4B01G259600.1 | Wheat | cytosol | 81.45 | 80.87 |
| GSMUA_Achr7P26190_001 | Banana | cytosol | 72.0 | 72.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 70.91 | 70.91 |
| Bra031839.1-P | Field mustard | mitochondrion | 16.36 | 70.31 |
| CDY43581 | Canola | mitochondrion | 16.0 | 68.75 |
| GSMUA_Achr5P08710_001 | Banana | cytosol | 68.0 | 68.0 |
| PGSC0003DMT400055247 | Potato | cytosol | 66.55 | 66.3 |
| Solyc02g092440.2.1 | Tomato | plastid | 66.18 | 65.94 |
| PGSC0003DMT400023484 | Potato | cytosol | 65.45 | 65.69 |
| KRH28358 | Soybean | mitochondrion | 65.45 | 65.22 |
| Solyc03g044010.2.1 | Tomato | cytosol, nucleus, unclear | 64.73 | 64.96 |
| KRH77123 | Soybean | endoplasmic reticulum, mitochondrion | 65.09 | 64.86 |
| VIT_07s0129g00170.t01 | Wine grape | cytosol | 63.64 | 63.41 |
| VIT_07s0129g00100.t01 | Wine grape | cytosol | 25.09 | 60.53 |
| CDY18662 | Canola | cytosol | 60.0 | 59.78 |
| CDY08723 | Canola | cytosol, nucleus, plastid | 60.0 | 59.78 |
| Bra037844.1-P | Field mustard | cytosol, mitochondrion, nucleus | 60.0 | 59.78 |
| Bra024444.1-P | Field mustard | cytosol, nucleus, plastid | 60.0 | 59.78 |
| CDY36497 | Canola | cytosol, nucleus, plastid | 59.64 | 59.42 |
| CDX81312 | Canola | cytosol, mitochondrion, nucleus | 59.64 | 59.42 |
| Bra012915.1-P | Field mustard | cytosol, mitochondrion, nucleus | 56.73 | 56.52 |
| CDY02103 | Canola | cytosol, mitochondrion, nucleus | 56.36 | 56.16 |
| AT3G49920.1 | Thale cress | cytosol | 45.82 | 55.75 |
| KRH15450 | Soybean | cytosol | 56.0 | 55.6 |
| KRH05595 | Soybean | plastid | 49.82 | 54.58 |
| AT5G67500.1 | Thale cress | cytosol, mitochondrion, nucleus | 57.09 | 51.48 |
| Zm00001d020219_P004 | Maize | cytosol | 46.18 | 46.01 |
| Zm00001d038840_P001 | Maize | mitochondrion | 45.09 | 44.93 |
| Zm00001d005649_P001 | Maize | cytosol | 17.45 | 44.44 |
| Zm00001d011135_P001 | Maize | cytosol, mitochondrion, nucleus | 41.09 | 40.79 |
| Zm00001d027580_P001 | Maize | mitochondrion | 41.82 | 40.64 |
| VIT_18s0001g09120.t01 | Wine grape | mitochondrion | 12.0 | 39.29 |
| Zm00001d044318_P001 | Maize | cytosol, mitochondrion | 39.27 | 39.27 |
| Zm00001d043661_P001 | Maize | cytosol | 37.82 | 37.55 |
| Zm00001d011242_P002 | Maize | cytosol | 40.0 | 36.3 |
| CDY23028 | Canola | mitochondrion | 28.36 | 36.11 |
| Zm00001d027578_P001 | Maize | peroxisome | 33.45 | 36.08 |
| Zm00001d048362_P002 | Maize | endoplasmic reticulum, plasma membrane | 40.0 | 29.65 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:24.4.1 | UniProt:A0A1D6JS28 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0008308 | GO:GO:0015698 | GO:GO:0016020 | GO:GO:0055085 | GO:GO:0098656 |
| InterPro:IPR023614 | ProteinID:ONL94722.1 | PFAM:PF01459 | ScanProsite:PS00558 | PANTHER:PTHR11743 | PANTHER:PTHR11743:SF29 |
| InterPro:Porin_Euk | InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf | UniParc:UPI000221425A | EnsemblPlantsGene:Zm00001d028102 | EnsemblPlants:Zm00001d028102_P001 |
| EnsemblPlants:Zm00001d028102_T001 | : | : | : | : | : |
Description
Outer mitochondrial membrane protein porin
Coordinates
chr1:+:23004511..23008536
Molecular Weight (calculated)
29229.9 Da
IEP (calculated)
9.531
GRAVY (calculated)
-0.153
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGPGLFSDI GKKAKDLLSK DYTYDQKLTI STASASGLGL TSTAVKKGGL YSLDVSSVYK YKNTTVDVKV DTESNISTTL TVLDALPCTK LVTSVKLPDY
101: NYGKVELQYF HENATFATVV GTKPSPVIDL SGTVGAQGVA FGAEAGYDTA TGKFTKYTAA IGVTKPDYHA AFILADKGDT IKVSGVYHLD EKQKASAVAE
201: LTRRLSTNQN TLTVGGLYTV DSQTAVKARL NNNGTLAALL QHELKPKSLL TISGEFDTKA LDRPPKFGLA LALKP
101: NYGKVELQYF HENATFATVV GTKPSPVIDL SGTVGAQGVA FGAEAGYDTA TGKFTKYTAA IGVTKPDYHA AFILADKGDT IKVSGVYHLD EKQKASAVAE
201: LTRRLSTNQN TLTVGGLYTV DSQTAVKARL NNNGTLAALL QHELKPKSLL TISGEFDTKA LDRPPKFGLA LALKP
001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP
Arabidopsis Description
VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.