Factsheet for VIT_07s0129g00100.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0129g00170.t01	Wine grape	cytosol	94.74	39.13
PGSC0003DMT400055247	Potato	cytosol	77.19	31.88
PGSC0003DMT400023484	Potato	cytosol	76.32	31.75
Solyc03g044010.2.1	Tomato	cytosol, nucleus, unclear	75.44	31.39
Solyc02g092440.2.1	Tomato	plastid	75.44	31.16
KRH28358	Soybean	mitochondrion	73.68	30.43
KRH77123	Soybean	endoplasmic reticulum, mitochondrion	73.68	30.43
CDY23028	Canola	mitochondrion	57.02	30.09
Bra037844.1-P	Field mustard	cytosol, mitochondrion, nucleus	72.81	30.07
CDY18662	Canola	cytosol	71.93	29.71
CDX81312	Canola	cytosol, mitochondrion, nucleus	70.18	28.99
CDY08723	Canola	cytosol, nucleus, plastid	69.3	28.62
CDY36497	Canola	cytosol, nucleus, plastid	69.3	28.62
Bra024444.1-P	Field mustard	cytosol, nucleus, plastid	68.42	28.26
TraesCS4D01G258900.1	Wheat	cytosol	66.67	27.64
TraesCS4B01G259600.1	Wheat	cytosol	66.67	27.44
TraesCS4A01G046000.1	Wheat	plastid	66.67	27.44
HORVU4Hr1G070150.3	Barley	plasma membrane	66.67	27.44
GSMUA_AchrUn_...	Banana	cytosol	65.79	27.27
GSMUA_Achr5P08710_001	Banana	cytosol	64.91	26.91
Bra012915.1-P	Field mustard	cytosol, mitochondrion, nucleus	64.91	26.81
EER92681	Sorghum	mitochondrion	64.04	26.55
Os03t0202200-01	Rice	mitochondrion, nucleus, plasma membrane, plastid	64.04	26.35
AT5G67500.1	Thale cress	cytosol, mitochondrion, nucleus	70.18	26.23
GSMUA_Achr7P26190_001	Banana	cytosol	62.28	25.82
Zm00001d048149_P002	Maize	mitochondrion	61.4	25.45
CDY02103	Canola	cytosol, mitochondrion, nucleus	61.4	25.36
Zm00001d028102_P001	Maize	mitochondrion	60.53	25.09
AT3G49920.1	Thale cress	cytosol	49.12	24.78
VIT_01s0026g01650.t01	Wine grape	cytosol	56.14	23.19
VIT_14s0108g00010.t01	Wine grape	cytosol	52.63	21.74
VIT_11s0052g01030.t01	Wine grape	cytosol	43.86	18.05
CDY43581	Canola	mitochondrion	9.65	17.19
Bra031839.1-P	Field mustard	mitochondrion	9.65	17.19
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	19.3	8.53
VIT_18s0001g09120.t01	Wine grape	mitochondrion	2.63	3.57

Protein Annotations

Gene3D:2.40.160.10	MapMan:35.1	ProteinID:CCB57740	ProteinID:CCB57740.1	UniProt:F6HST0	EMBL:FN596246
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0055085	InterPro:IPR023614	PFAM:PF01459
PANTHER:PTHR11743	PANTHER:PTHR11743:SF29	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniParc:UPI0002108B8D	ArrayExpress:VIT_07s0129g00100
EnsemblPlantsGene:VIT_07s0129g00100	EnsemblPlants:VIT_07s0129g00100.t01	:	:	:	:

Description

No Description!

Coordinates

chr7:-:15372179..15378097

Molecular Weight (calculated)

12229.4 Da

IEP (calculated)

8.814

GRAVY (calculated)

-0.299

Length

114 amino acids

Sequence
(BLAST)

001: MSKGPGLFAD IGKKAKDLLT RDYISDQKFT VSTYSDTGVA ITSTAVKKGG LSTGDVAVQY KYKNSVIDVK ADTGSNINTT LTFTEIIPST KTIASFKFPD
101: YNSGKNEITV SIDD

Best Arabidopsis Sequence Match ( AT5G67500.1 )
(BLAST)

001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRNND RRIQIKTVST TSQFGLVDQL LVIEVHSQRR
301: FSQYC

Arabidopsis Description

VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.