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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • mitochondrion 3
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:mitochondrion
MultiLoc:cytosol
Plant-mPloc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
plastid: 20363867
plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400055247 Potato cytosol 98.91 98.91
Solyc03g044010.2.1 Tomato cytosol, nucleus, unclear 88.04 88.69
VIT_07s0129g00170.t01 Wine grape cytosol 78.26 78.26
VIT_07s0129g00100.t01 Wine grape cytosol 31.16 75.44
Bra031839.1-P Field mustard mitochondrion 17.39 75.0
KRH28358 Soybean mitochondrion 75.0 75.0
KRH77123 Soybean endoplasmic reticulum, mitochondrion 74.28 74.28
CDY43581 Canola mitochondrion 17.03 73.44
GSMUA_AchrUn_... Banana cytosol 68.84 69.09
CDY36497 Canola cytosol, nucleus, plastid 68.84 68.84
CDY18662 Canola cytosol 68.48 68.48
CDY08723 Canola cytosol, nucleus, plastid 68.48 68.48
Bra037844.1-P Field mustard cytosol, mitochondrion, nucleus 68.12 68.12
Bra024444.1-P Field mustard cytosol, nucleus, plastid 68.12 68.12
CDX81312 Canola cytosol, mitochondrion, nucleus 67.75 67.75
GSMUA_Achr7P26190_001 Banana cytosol 67.39 67.64
EER92681 Sorghum mitochondrion 66.67 66.91
Zm00001d048149_P002 Maize mitochondrion 66.67 66.91
Zm00001d028102_P001 Maize mitochondrion 65.94 66.18
Bra012915.1-P Field mustard cytosol, mitochondrion, nucleus 65.94 65.94
GSMUA_Achr5P08710_001 Banana cytosol 65.22 65.45
TraesCS4D01G258900.1 Wheat cytosol 64.86 65.09
HORVU4Hr1G070150.3 Barley plasma membrane 65.22 64.98
TraesCS4A01G046000.1 Wheat plastid 64.86 64.62
TraesCS4B01G259600.1 Wheat cytosol 64.86 64.62
Os03t0202200-01 Rice mitochondrion, nucleus, plasma membrane, plastid 64.86 64.62
CDY02103 Canola cytosol, mitochondrion, nucleus 64.49 64.49
AT5G67500.1 Thale cress cytosol, mitochondrion, nucleus 66.3 60.0
AT3G49920.1 Thale cress cytosol 48.19 58.85
Solyc02g067460.2.1 Tomato plastid 52.54 52.54
Solyc01g010760.2.1 Tomato plastid 50.36 50.36
Solyc07g008350.2.1 Tomato cytosol, plastid 45.65 45.65
Solyc03g058920.2.1 Tomato plastid 51.45 42.01
CDY23028 Canola mitochondrion 32.61 41.67
Solyc03g113210.2.1 Tomato cytosol 27.54 32.2
Protein Annotations
Gene3D:2.40.160.10MapMan:24.4.1GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005739GO:GO:0005741GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0055085
InterPro:IPR023614UniProt:K4BD40PFAM:PF01459PANTHER:PTHR11743PANTHER:PTHR11743:SF29InterPro:Porin_Euk/Tom40
InterPro:Porin_dom_sfEnsemblPlantsGene:Solyc02g092440.2EnsemblPlants:Solyc02g092440.2.1UniParc:UPI0002767F55::
Description
No Description!
Coordinates
chr2:-:53494779..53498704
Molecular Weight (calculated)
29351.0 Da
IEP (calculated)
9.291
GRAVY (calculated)
-0.140
Length
276 amino acids
Sequence
(BLAST)
001: MSKGPGLFSD IGKKARDVLT KDYISDQKLS ISTYSDTGVA LTSTAVKKGG LSTGDVGAQY KYKNTLIDVK VDTASNISTT LTLNDIAPST KTIASLKFPD
101: YSSGKLEVQY YHHHAAFSTA VGLKQNPIVD LSVTLGTPTF AIGAEASYET AEGKLAKYTA GISVTKPDSC AAIILGDKGD TIKASYIHHL DELKKSAAVG
201: EITRRFSTNE NTFTVGGSYA VDNLTIVKLK LNNHGNLGAL LQHELIPKSL LTISSEFDTK ALEKTPKFGV ALALKP
Best Arabidopsis Sequence Match ( AT5G67500.3 )
(BLAST)
001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP
Arabidopsis Description
VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
SUBAcon: [cytosol,nucleus,mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.