Factsheet for Solyc02g067460.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g006160.2.1
Solyc12g008510.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01280.1	Solyc12g008510.1.1	AT4G29130.1	17965176
AT3G01280.1	Solyc07g006160.2.1	AT4G30490.1	19523112

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017754	Potato	cytosol	99.64	99.64
KRG93501	Soybean	endoplasmic reticulum, mitochondrion	80.8	80.8
KRH18503	Soybean	mitochondrion	80.07	80.07
VIT_14s0108g00010.t01	Wine grape	cytosol	78.99	78.99
Solyc01g010760.2.1	Tomato	plastid	77.54	77.54
KRH40133	Soybean	mitochondrion	76.81	76.81
KRH01127	Soybean	mitochondrion	76.81	76.81
CDY68122	Canola	cytosol	72.46	72.46
AT3G01280.1	Thale cress	cytosol, mitochondrion	72.1	72.1
CDY66736	Canola	cytosol, mitochondrion, nucleus	72.1	72.1
CDY28690	Canola	cytosol	71.74	71.74
Bra040507.1-P	Field mustard	cytosol	71.74	71.74
Bra006664.1-P	Field mustard	cytosol	71.38	71.38
CDY63765	Canola	cytosol	70.65	70.65
CDY59668	Canola	cytosol	70.29	70.29
CDX91952	Canola	mitochondrion	70.29	70.29
Bra008723.1-P	Field mustard	cytosol	69.93	69.93
CDY69321	Canola	cytosol	69.93	69.93
Bra001010.1-P	Field mustard	mitochondrion	69.57	69.57
AT5G15090.2	Thale cress	cytosol, mitochondrion	68.84	69.34
CDX74294	Canola	cytosol, mitochondrion	69.2	69.2
Solyc03g058920.2.1	Tomato	plastid	84.06	68.64
CDY59666	Canola	cytosol	19.2	65.43
Bra039131.1-P	Field mustard	cytosol, golgi, mitochondrion	72.1	61.04
Solyc02g092440.2.1	Tomato	plastid	52.54	52.54
CDY70638	Canola	cytosol, mitochondrion	46.74	51.6
Solyc03g044010.2.1	Tomato	cytosol, nucleus, unclear	50.36	50.73
Solyc07g008350.2.1	Tomato	cytosol, plastid	47.1	47.1
Solyc03g113210.2.1	Tomato	cytosol	32.97	38.56

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150
GO:GO:0008308	GO:GO:0015698	GO:GO:0016020	GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614
UniProt:K4B778	PFAM:PF01459	ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF31	InterPro:Porin_Euk
InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	EnsemblPlantsGene:Solyc02g067460.2	EnsemblPlants:Solyc02g067460.2.1	UniParc:UPI00027691D8	:

Description

No Description!

Coordinates

chr2:+:37659144..37661840

Molecular Weight (calculated)

29560.9 Da

IEP (calculated)

8.955

GRAVY (calculated)

-0.199

Length

276 amino acids

Sequence
(BLAST)

001: MGKGPGLYTE IGKKARDLLY KDYQSDHKFS ITTYSPTGVV ITSSGSKKGD LFLADVNTQL KNKNVTTDIK VDTNSNLFTT ITVDEAAPGL KTILSFRVPD
101: QRSGKLEVQY LHDYAGICTS VGLTANPIVN FSGVVGTNIV ALGTDVSFDT KTGDFTKCNA GLSFTNADLV ASLNLNNKGD NLTASYYHTV SPLTSTAVGA
201: EVNHSFSTNE NIITVGTQHR LDPLTSVKAR INNFGKASAL LQHEWRPKSL FTVSGEVDTK SVDKGAKFGL ALALKP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.