Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040507.1-P | Field mustard | cytosol | 98.91 | 98.91 |
| CDY66736 | Canola | cytosol, mitochondrion, nucleus | 91.67 | 91.67 |
| CDX91952 | Canola | mitochondrion | 90.22 | 90.22 |
| CDY68122 | Canola | cytosol | 89.49 | 89.49 |
| CDX74294 | Canola | cytosol, mitochondrion | 89.13 | 89.13 |
| AT3G01280.1 | Thale cress | cytosol, mitochondrion | 85.51 | 85.51 |
| CDY59666 | Canola | cytosol | 22.1 | 75.31 |
| KRH18503 | Soybean | mitochondrion | 74.64 | 74.64 |
| KRG93501 | Soybean | endoplasmic reticulum, mitochondrion | 74.64 | 74.64 |
| KRH40133 | Soybean | mitochondrion | 73.19 | 73.19 |
| KRH01127 | Soybean | mitochondrion | 73.19 | 73.19 |
| PGSC0003DMT400005245 | Potato | cytosol | 72.83 | 72.83 |
| CDY69321 | Canola | cytosol | 72.46 | 72.46 |
| CDY63765 | Canola | cytosol | 72.46 | 72.46 |
| CDY59668 | Canola | cytosol | 72.46 | 72.46 |
| VIT_14s0108g00010.t01 | Wine grape | cytosol | 72.1 | 72.1 |
| Solyc02g067460.2.1 | Tomato | plastid | 71.74 | 71.74 |
| PGSC0003DMT400017754 | Potato | cytosol | 71.74 | 71.74 |
| Solyc03g058920.2.1 | Tomato | plastid | 72.1 | 58.88 |
| CDY43581 | Canola | mitochondrion | 13.41 | 57.81 |
| CDY70638 | Canola | cytosol, mitochondrion | 50.36 | 55.6 |
| CDY18662 | Canola | cytosol | 50.36 | 50.36 |
| CDY36497 | Canola | cytosol, nucleus, plastid | 50.0 | 50.0 |
| CDY08723 | Canola | cytosol, nucleus, plastid | 50.0 | 50.0 |
| CDX81312 | Canola | cytosol, mitochondrion, nucleus | 49.64 | 49.64 |
| CDY02103 | Canola | cytosol, mitochondrion, nucleus | 47.46 | 47.46 |
| CDX88625 | Canola | cytosol | 43.48 | 43.8 |
| CDY11866 | Canola | cytosol | 43.12 | 43.43 |
| CDY38301 | Canola | cytosol | 20.65 | 34.34 |
| CDY23028 | Canola | mitochondrion | 25.0 | 31.94 |
| CDY25906 | Canola | plasma membrane | 36.23 | 29.76 |
| CDY39954 | Canola | extracellular | 17.03 | 22.17 |
| CDY01000 | Canola | endoplasmic reticulum, plasma membrane | 26.09 | 19.94 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:24.4.1 | GO:A0A078GQ71 | UniProt:A0A078GQ71 | EnsemblPlants:CDY28690 | ProteinID:CDY28690 |
| ProteinID:CDY28690.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008308 |
| GO:GO:0015698 | GO:GO:0016020 | GO:GO:0055085 | GO:GO:0098656 | EnsemblPlantsGene:GSBRNA2T00041320001 | InterPro:IPR023614 |
| PFAM:PF01459 | ScanProsite:PS00558 | PANTHER:PTHR11743 | PANTHER:PTHR11743:SF31 | InterPro:Porin_Euk | InterPro:Porin_Euk/Tom40 |
| InterPro:Porin_dom_sf | UniParc:UPI0004EE74E3 | : | : | : | : |
Description
BnaCnng05760DBnaCnng05760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQ71]
Coordinates
chrLK032225:-:248454..250211
Molecular Weight (calculated)
29352.8 Da
IEP (calculated)
9.143
GRAVY (calculated)
-0.157
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKGPGLYTD IGKKARDLLY KDHNSDQKLS ITTYSPAGVA ITSTGTKKGE SLLGDVVFQL KQKNITTDFK VSTDNTVLIT ATVDEAAPGL KSIFSFKAPD
101: QNSGKIELQY LHDYAGISTS MGLTQNPTVN FSGVVGNNLL ALGTDVSFDT KSGSFTKINA GLNFTKDDLI ASLTLNDKGD SVNASYYHIV NPLFNTAVGA
201: EVNHKFASKV NTITVGTQHS IDPLTMVKAR VNSAGIANAL IQHEWSPKSF FTVSGEVDTK AIDKSAKVGL ALSLKP
101: QNSGKIELQY LHDYAGISTS MGLTQNPTVN FSGVVGNNLL ALGTDVSFDT KSGSFTKINA GLNFTKDDLI ASLTLNDKGD SVNASYYHIV NPLFNTAVGA
201: EVNHKFASKV NTITVGTQHS IDPLTMVKAR VNSAGIANAL IQHEWSPKSF FTVSGEVDTK AIDKSAKVGL ALSLKP
001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP
Arabidopsis Description
VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.