Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY59666 | Canola | cytosol | 27.6 | 85.19 |
| CDY69321 | Canola | cytosol | 76.8 | 69.57 |
| CDY59668 | Canola | cytosol | 76.4 | 69.2 |
| CDY63765 | Canola | cytosol | 67.2 | 60.87 |
| AT5G15090.2 | Thale cress | cytosol, mitochondrion | 58.0 | 52.92 |
| CDY66736 | Canola | cytosol, mitochondrion, nucleus | 56.4 | 51.09 |
| CDY28690 | Canola | cytosol | 55.6 | 50.36 |
| CDX91952 | Canola | mitochondrion | 55.2 | 50.0 |
| KRH40133 | Soybean | mitochondrion | 54.8 | 49.64 |
| CDY68122 | Canola | cytosol | 54.8 | 49.64 |
| CDX74294 | Canola | cytosol, mitochondrion | 54.4 | 49.28 |
| KRH18503 | Soybean | mitochondrion | 54.4 | 49.28 |
| KRH01127 | Soybean | mitochondrion | 54.4 | 49.28 |
| PGSC0003DMT400005245 | Potato | cytosol | 54.0 | 48.91 |
| KRG93501 | Soybean | endoplasmic reticulum, mitochondrion | 54.0 | 48.91 |
| VIT_14s0108g00010.t01 | Wine grape | cytosol | 52.0 | 47.1 |
| PGSC0003DMT400017754 | Potato | cytosol | 51.6 | 46.74 |
| Solyc02g067460.2.1 | Tomato | plastid | 51.6 | 46.74 |
| Solyc03g058920.2.1 | Tomato | plastid | 54.0 | 39.94 |
| CDY43581 | Canola | mitochondrion | 10.0 | 39.06 |
| CDY38301 | Canola | cytosol | 23.2 | 34.94 |
| CDX88625 | Canola | cytosol | 36.8 | 33.58 |
| CDY11866 | Canola | cytosol | 36.4 | 33.21 |
| CDY36497 | Canola | cytosol, nucleus, plastid | 33.2 | 30.07 |
| CDY18662 | Canola | cytosol | 32.8 | 29.71 |
| CDY08723 | Canola | cytosol, nucleus, plastid | 32.4 | 29.35 |
| CDX81312 | Canola | cytosol, mitochondrion, nucleus | 32.4 | 29.35 |
| CDY02103 | Canola | cytosol, mitochondrion, nucleus | 31.6 | 28.62 |
| CDY25906 | Canola | plasma membrane | 30.4 | 22.62 |
| CDY23028 | Canola | mitochondrion | 15.2 | 17.59 |
| CDY39954 | Canola | extracellular | 13.6 | 16.04 |
| CDY01000 | Canola | endoplasmic reticulum, plasma membrane | 22.0 | 15.24 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:24.4.1 | GO:A0A078JSQ0 | UniProt:A0A078JSQ0 | EnsemblPlants:CDY70638 | ProteinID:CDY70638 |
| ProteinID:CDY70638.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0005741 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0055085 | EnsemblPlantsGene:GSBRNA2T00005069001 |
| InterPro:IPR023614 | PFAM:PF01459 | PANTHER:PTHR11743 | PANTHER:PTHR11743:SF31 | InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf |
| UniParc:UPI0004EDE25F | : | : | : | : | : |
Description
BnaCnng69120DBnaCnng69120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JSQ0]
Coordinates
chrLK042783:+:250..2418
Molecular Weight (calculated)
26953.9 Da
IEP (calculated)
6.152
GRAVY (calculated)
-0.044
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLWESPSSS LMRRTLQALA NTFLELPYVD GQIQFVKGAD TYPSQDHKNF TADIKVASDS SILTVFTYDE ATPGLKAIVS AKVSDQKSAE VELQYLHPHV
101: GICTSVGLTA NPVVNFSGVI GTSVLALGTD VYQVSFDTES GNFKHFNTGV SFTKDDLIAA LTLNDKGENT VVGAEVNHNL KSQVISITVG AQHSLDPLTT
201: VKARVNNAGI ANPLIQHEWR PKSFITIFGE VDSRGIEKSA KVGFTIALKP
101: GICTSVGLTA NPVVNFSGVI GTSVLALGTD VYQVSFDTES GNFKHFNTGV SFTKDDLIAA LTLNDKGENT VVGAEVNHNL KSQVISITVG AQHSLDPLTT
201: VKARVNNAGI ANPLIQHEWR PKSFITIFGE VDSRGIEKSA KVGFTIALKP
001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP
Arabidopsis Description
VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.