CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

cytosol: 16847873

msms PMID: 16847873 doi

V Katavic, GK Agrawal, M Hajduch, SL Harris, JJ Thelen

University of Missouri-Columbia, Department of Biochemistry, Columbia 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008723.1-P	Field mustard	cytosol	100.0	100.0
CDY59668	Canola	cytosol	97.1	97.1
CDY59666	Canola	cytosol	27.17	92.59
CDY63765	Canola	cytosol	85.14	85.14
AT5G15090.2	Thale cress	cytosol, mitochondrion	77.9	78.47
CDY70638	Canola	cytosol, mitochondrion	69.57	76.8
CDY66736	Canola	cytosol, mitochondrion, nucleus	72.83	72.83
CDY28690	Canola	cytosol	72.46	72.46
CDX91952	Canola	mitochondrion	72.1	72.1
KRH18503	Soybean	mitochondrion	72.1	72.1
KRG93501	Soybean	endoplasmic reticulum, mitochondrion	71.74	71.74
PGSC0003DMT400005245	Potato	cytosol	71.38	71.38
KRH40133	Soybean	mitochondrion	71.38	71.38
KRH01127	Soybean	mitochondrion	71.38	71.38
CDY68122	Canola	cytosol	71.01	71.01
CDX74294	Canola	cytosol, mitochondrion	71.01	71.01
Solyc02g067460.2.1	Tomato	plastid	69.93	69.93
PGSC0003DMT400017754	Potato	cytosol	69.93	69.93
VIT_14s0108g00010.t01	Wine grape	cytosol	69.2	69.2
Solyc03g058920.2.1	Tomato	plastid	71.01	57.99
CDY43581	Canola	mitochondrion	12.68	54.69
CDX88625	Canola	cytosol	47.46	47.81
CDY11866	Canola	cytosol	47.1	47.45
CDY36497	Canola	cytosol, nucleus, plastid	46.74	46.74
CDY18662	Canola	cytosol	46.38	46.38
CDY08723	Canola	cytosol, nucleus, plastid	46.01	46.01
CDX81312	Canola	cytosol, mitochondrion, nucleus	45.65	45.65
CDY02103	Canola	cytosol, mitochondrion, nucleus	44.2	44.2
CDY38301	Canola	cytosol	22.46	37.35
CDY25906	Canola	plasma membrane	38.77	31.85
CDY23028	Canola	mitochondrion	23.91	30.56
CDY39954	Canola	extracellular	15.58	20.28
CDY01000	Canola	endoplasmic reticulum, plasma membrane	25.36	19.39

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	GO:A0A078JUS8	UniProt:A0A078JUS8	EnsemblPlants:CDY69321	ProteinID:CDY69321
ProteinID:CDY69321.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008308
GO:GO:0015698	GO:GO:0016020	GO:GO:0055085	GO:GO:0098656	EnsemblPlantsGene:GSBRNA2T00086600001	InterPro:IPR023614
PFAM:PF01459	ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF31	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40
InterPro:Porin_dom_sf	UniParc:UPI000025398F	:	:	:	:

Description

BnaA10g29750DBnaA10g29750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JUS8]

Coordinates

chrLK039136:+:1104..2827

Molecular Weight (calculated)

29368.9 Da

IEP (calculated)

9.167

GRAVY (calculated)

-0.126

Length

276 amino acids

Sequence
(BLAST)

001: MGKGPGLYTE IGKKARDLLY KDYQGDQKLS ITTYSSTGVA ITTSGTNKGD LFLGDVVTQI KNKNFTADIK VASDSSILTT FTYDEATPGL KAIVSAKVPD
101: QKSAKVELQY MHPHAGICTS VGLTANPVVN FSGVIGTSVL ALGTDVSFDT ESGNFKHFNT GVSFTKDDLI ASLTLNDKGE KLTASYYHIV NPLKNTVVGA
201: EVSHNLKSQV NSITVGTQHA LDPLTTVKAR VNNAGIANAL IQHEWRPKSF ITISGEVDSK AIEKSAKVGF ALALKP

Best Arabidopsis Sequence Match ( AT5G15090.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY RDYQGDQKFS VTTYSSTGVA ITTTGTNKGS LFLGDVATQV KNNNFTADVK VSTDSSLLTT LTFDEPAPGL KVIVQAKLPD
101: HKSGKAEVQY FHDYAGISTS VGFTATPIVN FSGVVGTNGL SLGTDVAYNT ESGNFKHFNA GFNFTKDDLT ASLILNDKGE KLNASYYQIV SPSTVVGAEI
201: SHNFTTKENA ITVGTQHALD PLTTVKARVN NAGVANALIQ HEWRPKSFFT VSGEVDSKAI DKSAKVGIAL ALKP

Arabidopsis Description

VDAC3Mitochondrial outer membrane protein porin 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMX3]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.