CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72246
CDX82746
CDY03331
CDY35895
CDY39208
CDY48733

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01280.1	CDX82746	AT4G29130.1	17965176
AT3G01280.1	CDY03331	AT4G29130.1	17965176
AT3G01280.1	CDY35895	AT4G29130.1	17965176
AT3G01280.1	CDY48733	AT4G29130.1	17965176
AT3G01280.1	CDX72246	AT4G30490.1	19523112
AT3G01280.1	CDY39208	AT4G30490.1	19523112

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001010.1-P	Field mustard	mitochondrion	99.28	99.28
CDX91952	Canola	mitochondrion	98.19	98.19
CDY66736	Canola	cytosol, mitochondrion, nucleus	92.03	92.03
CDY68122	Canola	cytosol	90.58	90.58
CDY28690	Canola	cytosol	89.13	89.13
AT3G01280.1	Thale cress	cytosol, mitochondrion	85.87	85.87
KRG93501	Soybean	endoplasmic reticulum, mitochondrion	74.28	74.28
KRH18503	Soybean	mitochondrion	73.91	73.91
VIT_14s0108g00010.t01	Wine grape	cytosol	72.83	72.83
PGSC0003DMT400005245	Potato	cytosol	72.46	72.46
KRH01127	Soybean	mitochondrion	71.74	71.74
KRH40133	Soybean	mitochondrion	71.74	71.74
CDY59668	Canola	cytosol	71.38	71.38
CDY69321	Canola	cytosol	71.01	71.01
CDY59666	Canola	cytosol	20.65	70.37
PGSC0003DMT400017754	Potato	cytosol	69.2	69.2
CDY63765	Canola	cytosol	69.2	69.2
Solyc02g067460.2.1	Tomato	plastid	69.2	69.2
Solyc03g058920.2.1	Tomato	plastid	71.74	58.58
CDY70638	Canola	cytosol, mitochondrion	49.28	54.4
CDY43581	Canola	mitochondrion	11.96	51.56
CDY36497	Canola	cytosol, nucleus, plastid	47.83	47.83
CDY08723	Canola	cytosol, nucleus, plastid	47.83	47.83
CDY18662	Canola	cytosol	47.83	47.83
CDX81312	Canola	cytosol, mitochondrion, nucleus	47.83	47.83
CDY02103	Canola	cytosol, mitochondrion, nucleus	44.93	44.93
CDX88625	Canola	cytosol	41.67	41.97
CDY11866	Canola	cytosol	41.67	41.97
CDY38301	Canola	cytosol	21.74	36.14
CDY23028	Canola	mitochondrion	24.28	31.02
CDY25906	Canola	plasma membrane	35.51	29.17
CDY39954	Canola	extracellular	17.75	23.11
CDY01000	Canola	endoplasmic reticulum, plasma membrane	25.0	19.11

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	GO:A0A078CDQ6	EnsemblPlants:CDX74294	ProteinID:CDX74294	ProteinID:CDX74294.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008308	GO:GO:0016020
GO:GO:0055085	GO:GO:0098656	EnsemblPlantsGene:GSBRNA2T00112087001	InterPro:IPR023614	PFAM:PF01459	ScanProsite:PS00558
PANTHER:PTHR11743	PANTHER:PTHR11743:SF31	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniParc:UPI0004EF25AC
SEG:seg	:	:	:	:	:

Description

BnaA03g27530D

Coordinates

chrLK031800:+:2100497..2102427

Molecular Weight (calculated)

29303.8 Da

IEP (calculated)

8.938

GRAVY (calculated)

-0.116

Length

276 amino acids

Sequence
(BLAST)

001: MVKGPGLYTD IGKKVRDLLF KDHNSDHKLS ITTQSPAGVA ITSTGTKKGD LLLGDVGFLL KQKNITTDLR VCTDNTVLIT ATVDEAAPGL KSIFSFRAPD
101: QNSGKIELQY LHDYAGISTS MGLTQNPTVN FSGVIGTNVL AAGTDVSFDT KSGNFTKINA GVNFTKDDLI ASLTLNDKGD SVNASYYHIV NPLFNTAVGA
201: EVSHKFSSKT NTITVGTQHS LDPLTTVKAR VNSAGIANAL IQHQWTPGSF FTISGEVDTK AIDKNAKVGL ALSLRP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.