CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72246
CDX82746
CDY03331
CDY35895
CDY39208
CDY48733

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01280.1	CDX82746	AT4G29130.1	17965176
AT3G01280.1	CDY03331	AT4G29130.1	17965176
AT3G01280.1	CDY35895	AT4G29130.1	17965176
AT3G01280.1	CDY48733	AT4G29130.1	17965176
AT3G01280.1	CDX72246	AT4G30490.1	19523112
AT3G01280.1	CDY39208	AT4G30490.1	19523112

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68122	Canola	cytosol	94.93	94.93
CDX91952	Canola	mitochondrion	93.48	93.48
CDX74294	Canola	cytosol, mitochondrion	92.03	92.03
CDY28690	Canola	cytosol	91.67	91.67
AT3G01280.1	Thale cress	cytosol, mitochondrion	85.51	85.51
KRG93501	Soybean	endoplasmic reticulum, mitochondrion	76.81	76.81
KRH18503	Soybean	mitochondrion	76.09	76.09
VIT_14s0108g00010.t01	Wine grape	cytosol	75.36	75.36
PGSC0003DMT400005245	Potato	cytosol	73.91	73.91
KRH40133	Soybean	mitochondrion	73.19	73.19
KRH01127	Soybean	mitochondrion	73.19	73.19
CDY59668	Canola	cytosol	73.19	73.19
CDY59666	Canola	cytosol	21.38	72.84
CDY69321	Canola	cytosol	72.83	72.83
Solyc02g067460.2.1	Tomato	plastid	72.1	72.1
PGSC0003DMT400017754	Potato	cytosol	72.1	72.1
CDY63765	Canola	cytosol	71.74	71.74
Solyc03g058920.2.1	Tomato	plastid	73.19	59.76
CDY70638	Canola	cytosol, mitochondrion	51.09	56.4
CDY43581	Canola	mitochondrion	11.96	51.56
CDY18662	Canola	cytosol	50.0	50.0
CDX81312	Canola	cytosol, mitochondrion, nucleus	49.28	49.28
CDY36497	Canola	cytosol, nucleus, plastid	49.28	49.28
CDY08723	Canola	cytosol, nucleus, plastid	49.28	49.28
CDY02103	Canola	cytosol, mitochondrion, nucleus	47.46	47.46
CDX88625	Canola	cytosol	43.48	43.8
CDY11866	Canola	cytosol	43.48	43.8
CDY38301	Canola	cytosol	21.74	36.14
CDY23028	Canola	mitochondrion	24.64	31.48
CDY25906	Canola	plasma membrane	36.96	30.36
CDY39954	Canola	extracellular	17.39	22.64
CDY01000	Canola	endoplasmic reticulum, plasma membrane	26.09	19.94

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	GO:A0A078JLR3	UniProt:A0A078JLR3	EnsemblPlants:CDY66736	ProteinID:CDY66736
ProteinID:CDY66736.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008308
GO:GO:0015698	GO:GO:0016020	GO:GO:0055085	GO:GO:0098656	EnsemblPlantsGene:GSBRNA2T00055650001	InterPro:IPR023614
PFAM:PF01459	ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF31	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40
InterPro:Porin_dom_sf	UniParc:UPI0004EE518C	:	:	:	:

Description

BnaCnng52100DBnaCnng52100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JLR3]

Coordinates

chrLK035433:-:7244..8940

Molecular Weight (calculated)

29344.7 Da

IEP (calculated)

9.470

GRAVY (calculated)

-0.224

Length

276 amino acids

Sequence
(BLAST)

001: MGKGPGRYTD IGKKARDLLY KDHNSDQKLS ITTHSPAGVA ITSTGTKKGD SLLGDVSLQL KQKNITTDLK VSTDSTVLIT ATVDEAAPGL KSIFSFRAPD
101: QNSGKIELQY LHEYAGISTS MGLTQNPTVN FSGVVGTNVL ALGTDVSFDT KSGNFTKINA GVNFTKDDLI ASLTLNDKGD SVNASYYHIV NPLFNTAVGA
201: EVNHKFSTNV NTITVGTQHS LDPLTTVKAR VNSAGIANAL IQHQWTPRSF FTISGEVDTK AIDKNAKVGL ALSLKP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.