Factsheet for Solyc03g058920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 5
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 20363867
plastid: 22908117
nucleus: 25464976
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g006160.2.1
Solyc12g008510.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01280.1	Solyc12g008510.1.1	AT4G29130.1	17965176
AT3G01280.1	Solyc07g006160.2.1	AT4G30490.1	19523112

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005245	Potato	cytosol	80.18	98.19
Solyc02g067460.2.1	Tomato	plastid	68.64	84.06
KRH18503	Soybean	mitochondrion	65.38	80.07
KRG93501	Soybean	endoplasmic reticulum, mitochondrion	65.38	80.07
Solyc01g010760.2.1	Tomato	plastid	63.61	77.9
VIT_14s0108g00010.t01	Wine grape	cytosol	63.31	77.54
KRH40133	Soybean	mitochondrion	63.02	77.17
KRH01127	Soybean	mitochondrion	63.02	77.17
CDY66736	Canola	cytosol, mitochondrion, nucleus	59.76	73.19
CDX91952	Canola	mitochondrion	59.47	72.83
CDY68122	Canola	cytosol	59.17	72.46
CDY28690	Canola	cytosol	58.88	72.1
Bra040507.1-P	Field mustard	cytosol	58.88	72.1
Bra001010.1-P	Field mustard	mitochondrion	58.88	72.1
Bra006664.1-P	Field mustard	cytosol	58.88	72.1
CDX74294	Canola	cytosol, mitochondrion	58.58	71.74
CDY59668	Canola	cytosol	58.28	71.38
AT3G01280.1	Thale cress	cytosol, mitochondrion	57.99	71.01
CDY69321	Canola	cytosol	57.99	71.01
Bra008723.1-P	Field mustard	cytosol	57.99	71.01
CDY63765	Canola	cytosol	57.4	70.29
CDY59666	Canola	cytosol	16.57	69.14
AT5G15090.2	Thale cress	cytosol, mitochondrion	55.92	68.98
Bra039131.1-P	Field mustard	cytosol, golgi, mitochondrion	59.47	61.66
CDY70638	Canola	cytosol, mitochondrion	39.94	54.0
Solyc02g092440.2.1	Tomato	plastid	42.01	51.45
Solyc03g044010.2.1	Tomato	cytosol, nucleus, unclear	40.83	50.37
Solyc07g008350.2.1	Tomato	cytosol, plastid	36.09	44.2
Solyc03g113210.2.1	Tomato	cytosol	26.33	37.71

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150
GO:GO:0008308	GO:GO:0015698	GO:GO:0016020	GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614
UniProt:K4BGT9	PFAM:PF01459	ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF31	InterPro:Porin_Euk
InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	EnsemblPlantsGene:Solyc03g058920.2	EnsemblPlants:Solyc03g058920.2.1	TMHMM:TMhelix	UniParc:UPI0002768CD5
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:26848262..26852144

Molecular Weight (calculated)

36380.5 Da

IEP (calculated)

9.102

GRAVY (calculated)

-0.020

Length

338 amino acids

Sequence
(BLAST)

001: MTVQMKRSTR SSKTTISSPT GYKLGLLLLL YILHSTSTYC FIHHCCRAFT SISSTSVIFD SIMGKGPGLY SDIGKKTRDL LYRDYQTDHK FTITTYSATG
101: VAITSSGLKK GDLFLADVNT QLKNKNLTTD IKVDTNSNLL ATVTVDEAAP GLKTIFSCRI PDQSSAKMEL QYLHDYAGIC TSVGLTANPI VNFSGVLGTN
201: VLALGTDVSF DTKAGAITKC NAGLRFTNAD LITSLNLNNK GDSLSASYYH IVSPLTSTAV GAEVTHSFST SENTITVGTQ HQLDPLTTVK ARVNNFGMAT
301: ALIQHEWRPK SLFTISGEVD TKAVDKSAKF GLALALKP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.