Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY63765 | Canola | cytosol | 81.39 | 80.8 |
| CDY59666 | Canola | cytosol | 23.72 | 80.25 |
| CDY59668 | Canola | cytosol | 79.2 | 78.62 |
| Bra008723.1-P | Field mustard | cytosol | 78.47 | 77.9 |
| CDY69321 | Canola | cytosol | 78.47 | 77.9 |
| KRH18503 | Soybean | mitochondrion | 70.8 | 70.29 |
| KRG93501 | Soybean | endoplasmic reticulum, mitochondrion | 70.44 | 69.93 |
| Solyc02g067460.2.1 | Tomato | plastid | 69.34 | 68.84 |
| PGSC0003DMT400017754 | Potato | cytosol | 69.34 | 68.84 |
| PGSC0003DMT400005245 | Potato | cytosol | 68.61 | 68.12 |
| AT3G01280.1 | Thale cress | cytosol, mitochondrion | 68.61 | 68.12 |
| KRH01127 | Soybean | mitochondrion | 68.25 | 67.75 |
| KRH40133 | Soybean | mitochondrion | 68.25 | 67.75 |
| VIT_14s0108g00010.t01 | Wine grape | cytosol | 65.33 | 64.86 |
| CDY70638 | Canola | cytosol, mitochondrion | 52.92 | 58.0 |
| Solyc03g058920.2.1 | Tomato | plastid | 68.98 | 55.92 |
| AT3G49920.1 | Thale cress | cytosol | 35.77 | 43.36 |
| AT5G57490.1 | Thale cress | cytosol | 43.07 | 43.07 |
| AT5G67500.1 | Thale cress | cytosol, mitochondrion, nucleus | 46.72 | 41.97 |
| AT5G37610.1 | Thale cress | endoplasmic reticulum, extracellular | 18.61 | 31.29 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:24.4.1 | EntrezGene:831361 | ProteinID:AED92115.1 | ProteinID:AED92116.1 | EMBL:AJ131391 |
| ArrayExpress:AT5G15090 | EnsemblPlantsGene:AT5G15090 | RefSeq:AT5G15090 | TAIR:AT5G15090 | RefSeq:AT5G15090-TAIR-G | EnsemblPlants:AT5G15090.2 |
| TAIR:AT5G15090.2 | EMBL:AY063891 | EMBL:AY085248 | EMBL:AY122918 | ProteinID:CAC01828.1 | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 |
| GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005886 | GO:GO:0006091 | GO:GO:0006810 | GO:GO:0006811 |
| GO:GO:0006950 | GO:GO:0006952 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008219 |
| GO:GO:0008308 | GO:GO:0009060 | GO:GO:0009409 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009605 |
| GO:GO:0009607 | GO:GO:0009617 | GO:GO:0009626 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009735 |
| GO:GO:0009791 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0010029 | GO:GO:0015288 | GO:GO:0015698 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0030312 | GO:GO:0042742 | GO:GO:0046930 | GO:GO:0055085 |
| GO:GO:0098656 | InterPro:IPR023614 | RefSeq:NP_001190314.1 | RefSeq:NP_197013.1 | PFAM:PF01459 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00558 | PANTHER:PTHR11743 |
| PANTHER:PTHR11743:SF31 | InterPro:Porin_Euk | InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf | UniProt:Q9SMX3 | UniParc:UPI0000048B3D |
| Symbol:VDAC3 | SEG:seg | : | : | : | : |
Description
VDAC3Mitochondrial outer membrane protein porin 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMX3]
Coordinates
chr5:-:4888964..4891603
Molecular Weight (calculated)
29212.4 Da
IEP (calculated)
8.679
GRAVY (calculated)
-0.183
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKGPGLYTE IGKKARDLLY RDYQGDQKFS VTTYSSTGVA ITTTGTNKGS LFLGDVATQV KNNNFTADVK VSTDSSLLTT LTFDEPAPGL KVIVQAKLPD
101: HKSGKAEVQY FHDYAGISTS VGFTATPIVN FSGVVGTNGL SLGTDVAYNT ESGNFKHFNA GFNFTKDDLT ASLILNDKGE KLNASYYQIV SPSTVVGAEI
201: SHNFTTKENA ITVGTQHALD PLTTVKARVN NAGVANALIQ HEWRPKSFFT VSGEVDSKAI DKSAKVGIAL ALKP
101: HKSGKAEVQY FHDYAGISTS VGFTATPIVN FSGVVGTNGL SLGTDVAYNT ESGNFKHFNA GFNFTKDDLT ASLILNDKGE KLNASYYQIV SPSTVVGAEI
201: SHNFTTKENA ITVGTQHALD PLTTVKARVN NAGVANALIQ HEWRPKSFFT VSGEVDSKAI DKSAKVGIAL ALKP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.