Factsheet for PGSC0003DMT400017754

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000795
PGSC0003DMT400029004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01280.1	PGSC0003DMT400000795	AT4G29130.1	17965176
AT3G01280.1	PGSC0003DMT400029004	AT4G30490.1	19523112

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g067460.2.1	Tomato	plastid	99.64	99.64
PGSC0003DMT400005245	Potato	cytosol	84.42	84.42
KRG93501	Soybean	endoplasmic reticulum, mitochondrion	80.8	80.8
KRH18503	Soybean	mitochondrion	80.07	80.07
VIT_14s0108g00010.t01	Wine grape	cytosol	78.62	78.62
KRH40133	Soybean	mitochondrion	76.81	76.81
KRH01127	Soybean	mitochondrion	76.81	76.81
PGSC0003DMT400002261	Potato	mitochondrion	75.72	75.72
CDY68122	Canola	cytosol	72.46	72.46
CDY66736	Canola	cytosol, mitochondrion, nucleus	72.1	72.1
AT3G01280.1	Thale cress	cytosol, mitochondrion	72.1	72.1
CDY28690	Canola	cytosol	71.74	71.74
Bra040507.1-P	Field mustard	cytosol	71.74	71.74
Bra006664.1-P	Field mustard	cytosol	71.38	71.38
CDY63765	Canola	cytosol	70.65	70.65
CDY59668	Canola	cytosol	70.29	70.29
CDX91952	Canola	mitochondrion	70.29	70.29
CDY69321	Canola	cytosol	69.93	69.93
Bra008723.1-P	Field mustard	cytosol	69.93	69.93
Bra001010.1-P	Field mustard	mitochondrion	69.57	69.57
AT5G15090.2	Thale cress	cytosol, mitochondrion	68.84	69.34
CDX74294	Canola	cytosol, mitochondrion	69.2	69.2
CDY59666	Canola	cytosol	19.2	65.43
Bra039131.1-P	Field mustard	cytosol, golgi, mitochondrion	72.1	61.04
PGSC0003DMT400055247	Potato	cytosol	52.54	52.54
CDY70638	Canola	cytosol, mitochondrion	46.74	51.6
PGSC0003DMT400023484	Potato	cytosol	50.72	51.09
PGSC0003DMT400065213	Potato	cytosol	33.7	38.91

Protein Annotations

EntrezGene:102580103	Gene3D:2.40.160.10	MapMan:24.4.1	ProteinID:CAA56599	ProteinID:CAA56599.1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005741	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008308	GO:GO:0015288
GO:GO:0015698	GO:GO:0016020	GO:GO:0016021	GO:GO:0046930	GO:GO:0055085	GO:GO:0098656
InterPro:IPR023614	RefSeq:NP_001275154.1	UniProt:P42055	PFAM:PF01459	EnsemblPlantsGene:PGSC0003DMG400006896	PGSC:PGSC0003DMG400006896
EnsemblPlants:PGSC0003DMT400017754	ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF31	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40
InterPro:Porin_dom_sf	UniParc:UPI000016DFC3	EMBL:X80386	:	:	:

Description

Mitochondrial outer membrane protein porin of 34 kDa [Source:UniProtKB/Swiss-Prot;Acc:P42055]

Coordinates

chr2:+:26022012..26025794

Molecular Weight (calculated)

29575.0 Da

IEP (calculated)

8.955

GRAVY (calculated)

-0.198

Length

276 amino acids

Sequence
(BLAST)

001: MGKGPGLYTE IGKKARDLLY KDYQSDHKFS ITTYSPTGVV ITSSGSKKGD LFLADVNTQL KNKNVTTDIK VDTNSNLFTT ITVDEAAPGL KTILSFRVPD
101: QRSGKLEVQY LHDYAGICTS VGLTANPIVN FSGVVGTNII ALGTDVSFDT KTGDFTKCNA GLSFTNADLV ASLNLNNKGD NLTASYYHTV SPLTSTAVGA
201: EVNHSFSTNE NIITVGTQHR LDPLTSVKAR INNFGKASAL LQHEWRPKSL FTVSGEVDTK SVDKGAKFGL ALALKP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.