Factsheet for PGSC0003DMT400002261

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

mitochondrion: 14983062

msms PMID: 14983062 doi

Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g010760.2.1	Tomato	plastid	97.83	97.83
VIT_01s0026g01650.t01	Wine grape	cytosol	84.78	84.78
KRH45848	Soybean	mitochondrion	77.9	77.9
PGSC0003DMT400005245	Potato	cytosol	77.54	77.54
KRG99160	Soybean	mitochondrion	76.81	76.81
PGSC0003DMT400017754	Potato	cytosol	75.72	75.72
PGSC0003DMT400055247	Potato	cytosol	50.72	50.72
PGSC0003DMT400023484	Potato	cytosol	49.28	49.63
PGSC0003DMT400065213	Potato	cytosol	37.68	43.51

Protein Annotations

EntrezGene:102603136	Gene3D:2.40.160.10	MapMan:24.4.1	ProteinID:CAA56600	ProteinID:CAA56600.1	ProteinID:CAA56601
ProteinID:CAA56601.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150
GO:GO:0008308	GO:GO:0015288	GO:GO:0015698	GO:GO:0016020	GO:GO:0016021	GO:GO:0046930
GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614	RefSeq:NP_001275134.1	UniProt:P42056	PFAM:PF01459
EnsemblPlantsGene:PGSC0003DMG400000864	PGSC:PGSC0003DMG400000864	EnsemblPlants:PGSC0003DMT400002261	ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF31
InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniParc:UPI000016DFC4	EMBL:X80387	EMBL:X80388

Description

Mitochondrial outer membrane protein porin of 36 kDa [Source:UniProtKB/Swiss-Prot;Acc:P42056]

Coordinates

chr1:+:13652218..13657866

Molecular Weight (calculated)

29395.7 Da

IEP (calculated)

8.383

GRAVY (calculated)

-0.112

Length

276 amino acids

Sequence
(BLAST)

001: MVKGPGLYSD IGKKARDLLY RDYVSDHKFT VTTYSTTGVA ITASGLKKGE LFLADVSTQL KNKNITTDVK VDTNSNVYTT ITVDEPAPGL KTIFSFVVPD
101: QKSGKVELQY LHEYAGINTS IGLTASPLVN FSGVAGNNTV ALGTDLSFDT ATGNFTKCNA GLSFSSSDLI ASLALNDKGD TVSASYYHTV KPVTNTAVGA
201: ELTHSFSSNE NTLTIGTQHL LDPLTTVKAR VNSYGKASAL IQHEWRPKSL FTISGEVDTR AIEKSAKIGL AVALKP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.