Factsheet for PGSC0003DMT400023484

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g044010.2.1	Tomato	cytosol, nucleus, unclear	98.18	98.18
PGSC0003DMT400055247	Potato	cytosol	89.78	89.13
VIT_07s0129g00170.t01	Wine grape	cytosol	79.2	78.62
VIT_07s0129g00100.t01	Wine grape	cytosol	31.75	76.32
KRH28358	Soybean	mitochondrion	74.82	74.28
KRH77123	Soybean	endoplasmic reticulum, mitochondrion	74.09	73.55
Bra031839.1-P	Field mustard	mitochondrion	17.15	73.44
CDY43581	Canola	mitochondrion	16.79	71.88
CDY18662	Canola	cytosol	68.98	68.48
Bra037844.1-P	Field mustard	cytosol, mitochondrion, nucleus	68.98	68.48
CDY36497	Canola	cytosol, nucleus, plastid	68.61	68.12
CDY08723	Canola	cytosol, nucleus, plastid	68.25	67.75
CDX81312	Canola	cytosol, mitochondrion, nucleus	68.25	67.75
Bra024444.1-P	Field mustard	cytosol, nucleus, plastid	67.88	67.39
EER92681	Sorghum	mitochondrion	66.06	65.82
Zm00001d048149_P002	Maize	mitochondrion	65.69	65.45
Zm00001d028102_P001	Maize	mitochondrion	65.69	65.45
GSMUA_AchrUn_...	Banana	cytosol	64.96	64.73
GSMUA_Achr7P26190_001	Banana	cytosol	64.6	64.36
Bra012915.1-P	Field mustard	cytosol, mitochondrion, nucleus	64.6	64.13
TraesCS4D01G258900.1	Wheat	cytosol	64.23	64.0
Os03t0202200-01	Rice	mitochondrion, nucleus, plasma membrane, plastid	64.6	63.9
HORVU4Hr1G070150.3	Barley	plasma membrane	64.23	63.54
TraesCS4B01G259600.1	Wheat	cytosol	64.23	63.54
TraesCS4A01G046000.1	Wheat	plastid	64.23	63.54
CDY02103	Canola	cytosol, mitochondrion, nucleus	63.5	63.04
GSMUA_Achr5P08710_001	Banana	cytosol	63.14	62.91
AT5G67500.1	Thale cress	cytosol, mitochondrion, nucleus	67.15	60.33
AT3G49920.1	Thale cress	cytosol	47.81	57.96
PGSC0003DMT400017754	Potato	cytosol	51.09	50.72
PGSC0003DMT400005245	Potato	cytosol	50.73	50.36
PGSC0003DMT400002261	Potato	mitochondrion	49.63	49.28
CDY23028	Canola	mitochondrion	33.58	42.59
PGSC0003DMT400065213	Potato	cytosol	27.01	30.96

Protein Annotations

EntrezGene:102596232	Gene3D:2.40.160.10	MapMan:24.4.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0055085	InterPro:IPR023614	UniProt:M1AIF8	PFAM:PF01459	EnsemblPlantsGene:PGSC0003DMG400009093	PGSC:PGSC0003DMG400009093
EnsemblPlants:PGSC0003DMT400023484	PANTHER:PTHR11743	PANTHER:PTHR11743:SF29	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniParc:UPI000296BFB6
RefSeq:XP_006350613.1	:	:	:	:	:

Description

Pom30 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009093]

Coordinates

chr3:-:6880255..6884107

Molecular Weight (calculated)

29078.7 Da

IEP (calculated)

9.328

GRAVY (calculated)

-0.067

Length

274 amino acids

Sequence
(BLAST)

001: MGPGLFSDIG KKAKDLLTKD YISDQKLSIS TYSDTGVALT STAVKKGGLS TGDVGALYKY KNTLIDVKVD TGSNILTTLT LTDIVPSTKT IASLKFPDYS
101: SGRLETQYFH HHATFTTAVA LKQSPAVDLS ITLGTPTFAL GAEASYETAT SKLTKYTAGI SVTKPDSCAA IILGDKGDTI KASYIHHMDS LKTTAATGEI
201: TRRFSTNENT FTVGGSYAVD SLTIVKLKLN NHGNLGAVLQ HEVIPKSLLT ISSEFDTKAL DKTPKFGVAL ALKP

Best Arabidopsis Sequence Match ( AT5G67500.3 )
(BLAST)

001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP

Arabidopsis Description

VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.