Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031839.1-P | Field mustard | mitochondrion | 98.44 | 98.44 |
| CDY59666 | Canola | cytosol | 43.75 | 34.57 |
| CDY36497 | Canola | cytosol, nucleus, plastid | 96.88 | 22.46 |
| CDY08723 | Canola | cytosol, nucleus, plastid | 95.31 | 22.1 |
| CDY18662 | Canola | cytosol | 89.06 | 20.65 |
| CDX81312 | Canola | cytosol, mitochondrion, nucleus | 89.06 | 20.65 |
| CDY02103 | Canola | cytosol, mitochondrion, nucleus | 81.25 | 18.84 |
| VIT_07s0129g00170.t01 | Wine grape | cytosol | 79.69 | 18.48 |
| KRH77123 | Soybean | endoplasmic reticulum, mitochondrion | 79.69 | 18.48 |
| KRH28358 | Soybean | mitochondrion | 79.69 | 18.48 |
| AT5G67500.1 | Thale cress | cytosol, mitochondrion, nucleus | 84.38 | 17.7 |
| PGSC0003DMT400055247 | Potato | cytosol | 75.0 | 17.39 |
| Solyc02g092440.2.1 | Tomato | plastid | 73.44 | 17.03 |
| Solyc03g044010.2.1 | Tomato | cytosol, nucleus, unclear | 71.88 | 16.79 |
| PGSC0003DMT400023484 | Potato | cytosol | 71.88 | 16.79 |
| EER92681 | Sorghum | mitochondrion | 71.88 | 16.73 |
| TraesCS4D01G258900.1 | Wheat | cytosol | 70.31 | 16.36 |
| TraesCS4B01G259600.1 | Wheat | cytosol | 70.31 | 16.25 |
| TraesCS4A01G046000.1 | Wheat | plastid | 70.31 | 16.25 |
| Zm00001d028102_P001 | Maize | mitochondrion | 68.75 | 16.0 |
| Zm00001d048149_P002 | Maize | mitochondrion | 68.75 | 16.0 |
| HORVU4Hr1G070150.3 | Barley | plasma membrane | 68.75 | 15.88 |
| Os03t0202200-01 | Rice | mitochondrion, nucleus, plasma membrane, plastid | 68.75 | 15.88 |
| GSMUA_Achr5P08710_001 | Banana | cytosol | 67.19 | 15.64 |
| GSMUA_AchrUn_... | Banana | cytosol | 67.19 | 15.64 |
| GSMUA_Achr7P26190_001 | Banana | cytosol | 64.06 | 14.91 |
| CDY28690 | Canola | cytosol | 57.81 | 13.41 |
| CDY69321 | Canola | cytosol | 54.69 | 12.68 |
| CDY63765 | Canola | cytosol | 54.69 | 12.68 |
| CDY59668 | Canola | cytosol | 54.69 | 12.68 |
| CDY68122 | Canola | cytosol | 53.12 | 12.32 |
| CDX91952 | Canola | mitochondrion | 53.12 | 12.32 |
| CDX74294 | Canola | cytosol, mitochondrion | 51.56 | 11.96 |
| CDY66736 | Canola | cytosol, mitochondrion, nucleus | 51.56 | 11.96 |
| CDY11866 | Canola | cytosol | 48.44 | 11.31 |
| CDX88625 | Canola | cytosol | 46.88 | 10.95 |
| CDY70638 | Canola | cytosol, mitochondrion | 39.06 | 10.0 |
| VIT_07s0129g00100.t01 | Wine grape | cytosol | 17.19 | 9.65 |
| CDY25906 | Canola | plasma membrane | 50.0 | 9.52 |
| CDY38301 | Canola | cytosol | 17.19 | 6.63 |
| CDY23028 | Canola | mitochondrion | 12.5 | 3.7 |
| CDY01000 | Canola | endoplasmic reticulum, plasma membrane | 20.31 | 3.6 |
| CDY39954 | Canola | extracellular | 4.69 | 1.42 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:24.4.1 | GO:A0A078I1C4 | UniProt:A0A078I1C4 | EnsemblPlants:CDY43581 | ProteinID:CDY43581 |
| ProteinID:CDY43581.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0005741 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0055085 | EnsemblPlantsGene:GSBRNA2T00076887001 |
| InterPro:IPR023614 | PFAM:PF01459 | PANTHER:PTHR11743 | PANTHER:PTHR11743:SF29 | InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf |
| UniParc:UPI0004EBBE0F | : | : | : | : | : |
Description
BnaC02g16780DBnaC02g16780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1C4]
Coordinates
chrLK032561:+:232076..232270
Molecular Weight (calculated)
6789.3 Da
IEP (calculated)
10.405
GRAVY (calculated)
-0.147
Length
64 amino acids
Sequence
(BLAST)
(BLAST)
1: MSKGPGLFAD HSTSVKAKLN NHGTLGALLQ HEVLPKSVVT VSSEIDTKAL DKHPRFGLSL ALKP
001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP
Arabidopsis Description
VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.