Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74294 | Canola | cytosol, mitochondrion | 98.19 | 98.19 |
| CDY66736 | Canola | cytosol, mitochondrion, nucleus | 93.48 | 93.48 |
| CDY68122 | Canola | cytosol | 91.3 | 91.3 |
| CDY28690 | Canola | cytosol | 90.22 | 90.22 |
| AT3G01280.1 | Thale cress | cytosol, mitochondrion | 86.96 | 86.96 |
| KRG93501 | Soybean | endoplasmic reticulum, mitochondrion | 74.64 | 74.64 |
| KRH18503 | Soybean | mitochondrion | 74.28 | 74.28 |
| VIT_14s0108g00010.t01 | Wine grape | cytosol | 73.91 | 73.91 |
| PGSC0003DMT400005245 | Potato | cytosol | 73.55 | 73.55 |
| CDY59668 | Canola | cytosol | 72.46 | 72.46 |
| KRH01127 | Soybean | mitochondrion | 72.1 | 72.1 |
| KRH40133 | Soybean | mitochondrion | 72.1 | 72.1 |
| CDY69321 | Canola | cytosol | 72.1 | 72.1 |
| CDY59666 | Canola | cytosol | 21.01 | 71.6 |
| PGSC0003DMT400017754 | Potato | cytosol | 70.29 | 70.29 |
| CDY63765 | Canola | cytosol | 70.29 | 70.29 |
| Solyc02g067460.2.1 | Tomato | plastid | 70.29 | 70.29 |
| Solyc03g058920.2.1 | Tomato | plastid | 72.83 | 59.47 |
| CDY70638 | Canola | cytosol, mitochondrion | 50.0 | 55.2 |
| CDY43581 | Canola | mitochondrion | 12.32 | 53.12 |
| CDY36497 | Canola | cytosol, nucleus, plastid | 48.91 | 48.91 |
| CDY08723 | Canola | cytosol, nucleus, plastid | 48.91 | 48.91 |
| CDY18662 | Canola | cytosol | 48.91 | 48.91 |
| CDX81312 | Canola | cytosol, mitochondrion, nucleus | 48.91 | 48.91 |
| CDY02103 | Canola | cytosol, mitochondrion, nucleus | 45.65 | 45.65 |
| CDX88625 | Canola | cytosol | 41.67 | 41.97 |
| CDY11866 | Canola | cytosol | 41.67 | 41.97 |
| CDY38301 | Canola | cytosol | 21.74 | 36.14 |
| CDY23028 | Canola | mitochondrion | 24.64 | 31.48 |
| CDY25906 | Canola | plasma membrane | 35.51 | 29.17 |
| CDY39954 | Canola | extracellular | 17.75 | 23.11 |
| CDY01000 | Canola | endoplasmic reticulum, plasma membrane | 24.64 | 18.84 |
Protein Annotations
| Gene3D:2.40.160.10 | MapMan:24.4.1 | GO:A0A078DST3 | EnsemblPlants:CDX91952 | ProteinID:CDX91952 | ProteinID:CDX91952.1 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0005741 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008308 | GO:GO:0016020 |
| GO:GO:0055085 | GO:GO:0098656 | EnsemblPlantsGene:GSBRNA2T00153588001 | InterPro:IPR023614 | PFAM:PF01459 | ScanProsite:PS00558 |
| PANTHER:PTHR11743 | PANTHER:PTHR11743:SF31 | InterPro:Porin_Euk | InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf | UniParc:UPI0004EE51C1 |
Description
BnaC03g32540D
Coordinates
chrLK031870:-:969990..971968
Molecular Weight (calculated)
29359.8 Da
IEP (calculated)
8.908
GRAVY (calculated)
-0.155
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKGPGLYTD IGKKVRDLLY KDHNSDHKLS ITTHSPAGVA ITSTGTKKGD LLLGDVTFQL KQKNITTDLR VCTDNTVLIT ATVDEAAPGL KSIFSFRAPD
101: QNSGKIELQY LHDYAGISTS MGLTQNPTVN FSGVIGTNVL AAGTDVSFDT KSGNFTKINA GVNFTKDDLI ASLTLNDKGD SVNASYYHIV NPLFNTAVGA
201: EVSHKFSSKT NTITVGTQHS LDPLTTVKAR VNSAGIANAL IQHQWTPGSF FTISGEVDTK AIDKNAKVGL ALSLKP
101: QNSGKIELQY LHDYAGISTS MGLTQNPTVN FSGVIGTNVL AAGTDVSFDT KSGNFTKINA GVNFTKDDLI ASLTLNDKGD SVNASYYHIV NPLFNTAVGA
201: EVSHKFSSKT NTITVGTQHS LDPLTTVKAR VNSAGIANAL IQHQWTPGSF FTISGEVDTK AIDKNAKVGL ALSLKP
001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP
Arabidopsis Description
VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.