Factsheet for AT3G01280.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006664.1-P	Field mustard	cytosol	86.96	86.96
CDX91952	Canola	mitochondrion	86.96	86.96
Bra001010.1-P	Field mustard	mitochondrion	86.23	86.23
CDX74294	Canola	cytosol, mitochondrion	85.87	85.87
CDY66736	Canola	cytosol, mitochondrion, nucleus	85.51	85.51
CDY28690	Canola	cytosol	85.51	85.51
Bra040507.1-P	Field mustard	cytosol	85.51	85.51
CDY68122	Canola	cytosol	84.78	84.78
KRH18503	Soybean	mitochondrion	74.28	74.28
KRG93501	Soybean	endoplasmic reticulum, mitochondrion	73.91	73.91
VIT_14s0108g00010.t01	Wine grape	cytosol	73.55	73.55
KRH01127	Soybean	mitochondrion	73.19	73.19
KRH40133	Soybean	mitochondrion	73.19	73.19
PGSC0003DMT400005245	Potato	cytosol	72.1	72.1
PGSC0003DMT400017754	Potato	cytosol	72.1	72.1
Solyc02g067460.2.1	Tomato	plastid	72.1	72.1
Bra039131.1-P	Field mustard	cytosol, golgi, mitochondrion	85.14	72.09
AT5G15090.2	Thale cress	cytosol, mitochondrion	68.12	68.61
Solyc03g058920.2.1	Tomato	plastid	71.01	57.99
AT3G49920.1	Thale cress	cytosol	36.96	45.13
AT5G67500.1	Thale cress	cytosol, mitochondrion, nucleus	47.83	43.28
AT5G57490.1	Thale cress	cytosol	41.67	41.97
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	20.65	34.97

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	EntrezGene:820914	UniProt:A0A178VE16	ProteinID:AAF03498.1	ProteinID:AEE73632.1
ArrayExpress:AT3G01280	EnsemblPlantsGene:AT3G01280	RefSeq:AT3G01280	TAIR:AT3G01280	RefSeq:AT3G01280-TAIR-G	EnsemblPlants:AT3G01280.1
TAIR:AT3G01280.1	EMBL:AY037217	EMBL:AY113169	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005741	GO:GO:0005773	GO:GO:0005774	GO:GO:0005886	GO:GO:0006810	GO:GO:0006811
GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0008308	GO:GO:0009507	GO:GO:0009536
GO:GO:0009605	GO:GO:0009607	GO:GO:0009617	GO:GO:0009941	GO:GO:0015288	GO:GO:0015698
GO:GO:0016020	GO:GO:0016021	GO:GO:0046930	GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614
RefSeq:NP_186777.1	ProteinID:OAP04469.1	PFAM:PF01459	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037
PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001170	PO:PO:0001185	PO:PO:0004507	PO:PO:0005052	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007131
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009001	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	ScanProsite:PS00558
PANTHER:PTHR11743	PANTHER:PTHR11743:SF31	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniProt:Q9SRH5
UniParc:UPI000000146D	Symbol:VDAC1	:	:	:	:

Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]

Coordinates

chr3:+:85551..88070

Molecular Weight (calculated)

29426.9 Da

IEP (calculated)

9.234

GRAVY (calculated)

-0.114

Length

276 amino acids

Sequence
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.