Factsheet for PGSC0003DMT400005245

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000795
PGSC0003DMT400029004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01280.1	PGSC0003DMT400000795	AT4G29130.1	17965176
AT3G01280.1	PGSC0003DMT400029004	AT4G30490.1	19523112

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017754	Potato	cytosol	84.42	84.42
KRH18503	Soybean	mitochondrion	80.8	80.8
KRG93501	Soybean	endoplasmic reticulum, mitochondrion	80.8	80.8
Solyc03g058920.2.1	Tomato	plastid	98.19	80.18
VIT_14s0108g00010.t01	Wine grape	cytosol	78.62	78.62
KRH40133	Soybean	mitochondrion	78.26	78.26
KRH01127	Soybean	mitochondrion	78.26	78.26
PGSC0003DMT400002261	Potato	mitochondrion	77.54	77.54
CDY66736	Canola	cytosol, mitochondrion, nucleus	73.91	73.91
CDY68122	Canola	cytosol	73.55	73.55
CDX91952	Canola	mitochondrion	73.55	73.55
Bra001010.1-P	Field mustard	mitochondrion	72.83	72.83
Bra006664.1-P	Field mustard	cytosol	72.83	72.83
CDY28690	Canola	cytosol	72.83	72.83
Bra040507.1-P	Field mustard	cytosol	72.83	72.83
CDX74294	Canola	cytosol, mitochondrion	72.46	72.46
AT3G01280.1	Thale cress	cytosol, mitochondrion	72.1	72.1
CDY59668	Canola	cytosol	71.74	71.74
CDY69321	Canola	cytosol	71.38	71.38
Bra008723.1-P	Field mustard	cytosol	71.38	71.38
CDY63765	Canola	cytosol	70.65	70.65
CDY59666	Canola	cytosol	20.29	69.14
AT5G15090.2	Thale cress	cytosol, mitochondrion	68.12	68.61
Bra039131.1-P	Field mustard	cytosol, golgi, mitochondrion	73.91	62.58
CDY70638	Canola	cytosol, mitochondrion	48.91	54.0
PGSC0003DMT400055247	Potato	cytosol	51.45	51.45
PGSC0003DMT400023484	Potato	cytosol	50.36	50.73
PGSC0003DMT400065213	Potato	cytosol	34.06	39.33

Protein Annotations

EntrezGene:102577832	Gene3D:2.40.160.10	MapMan:24.4.1	ProteinID:ABB02635	ProteinID:ABB02635.1	ProteinID:ABC01904
ProteinID:ABC01904.1	EMBL:DQ222504	EMBL:DQ294272	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810
GO:GO:0008150	GO:GO:0008308	GO:GO:0015698	GO:GO:0016020	GO:GO:0055085	GO:GO:0098656
InterPro:IPR023614	UniProt:M0ZPM9	PFAM:PF01459	EnsemblPlantsGene:PGSC0003DMG400002066	PGSC:PGSC0003DMG400002066	EnsemblPlants:PGSC0003DMT400005245
ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF31	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf
UniParc:UPI000295A735	RefSeq:XP_006361834.1	:	:	:	:

Description

34 kDa outer mitochondrial membrane protein porin [Source:PGSC_GENE;Acc:PGSC0003DMG400002066]

Coordinates

chr3:-:31362007..31366230

Molecular Weight (calculated)

29403.9 Da

IEP (calculated)

8.073

GRAVY (calculated)

-0.101

Length

276 amino acids

Sequence
(BLAST)

001: MGKGPGLYSD IGKKTRDLLY RDYQTDHKFT ITTYSPTGVA ITSSGLKKGD LFLADVNTQL KNKNITTDIK VDTNSNLLAT VTVDEAAPGL KTIFSCRIPD
101: QSSAKMELQY LHDYAGICTS VGLTANPIVN FSGVLGTNVL ALGTDVSFDT KAGAITKCNA GLSFTNADLI TSLNLNNKGD SLSASYYHIV TPLTSTAVGA
201: EVTHSFSTSE NTITVGTQHQ LDPLTTVKAR VNNFGTATAL IQHEWRPKSL FTISGEVDTK AVDKSAKFGL ALALKP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.