CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28358	Soybean	mitochondrion	97.1	97.1
CDY43581	Canola	mitochondrion	18.48	79.69
VIT_07s0129g00170.t01	Wine grape	cytosol	78.99	78.99
Bra031839.1-P	Field mustard	mitochondrion	18.12	78.12
PGSC0003DMT400055247	Potato	cytosol	75.0	75.0
Solyc02g092440.2.1	Tomato	plastid	74.28	74.28
PGSC0003DMT400023484	Potato	cytosol	73.55	74.09
VIT_07s0129g00100.t01	Wine grape	cytosol	30.43	73.68
Solyc03g044010.2.1	Tomato	cytosol, nucleus, unclear	72.83	73.36
CDY18662	Canola	cytosol	72.46	72.46
CDX81312	Canola	cytosol, mitochondrion, nucleus	72.1	72.1
Bra037844.1-P	Field mustard	cytosol, mitochondrion, nucleus	72.1	72.1
CDY36497	Canola	cytosol, nucleus, plastid	71.38	71.38
CDY08723	Canola	cytosol, nucleus, plastid	71.01	71.01
Bra024444.1-P	Field mustard	cytosol, nucleus, plastid	70.65	70.65
TraesCS4D01G258900.1	Wheat	cytosol	67.39	67.64
TraesCS4A01G046000.1	Wheat	plastid	67.39	67.15
TraesCS4B01G259600.1	Wheat	cytosol	67.39	67.15
HORVU4Hr1G070150.3	Barley	plasma membrane	67.03	66.79
Bra012915.1-P	Field mustard	cytosol, mitochondrion, nucleus	66.67	66.67
EER92681	Sorghum	mitochondrion	66.3	66.55
GSMUA_AchrUn_...	Banana	cytosol	65.94	66.18
GSMUA_Achr7P26190_001	Banana	cytosol	65.58	65.82
Zm00001d048149_P002	Maize	mitochondrion	65.58	65.82
CDY02103	Canola	cytosol, mitochondrion, nucleus	65.58	65.58
Zm00001d028102_P001	Maize	mitochondrion	64.86	65.09
Os03t0202200-01	Rice	mitochondrion, nucleus, plasma membrane, plastid	65.22	64.98
GSMUA_Achr5P08710_001	Banana	cytosol	64.49	64.73
AT5G67500.1	Thale cress	cytosol, mitochondrion, nucleus	68.84	62.3
AT3G49920.1	Thale cress	cytosol	50.72	61.95
KRH15450	Soybean	cytosol	59.06	58.84
KRH05595	Soybean	plastid	50.0	54.98
KRH18503	Soybean	mitochondrion	52.54	52.54
KRG93501	Soybean	endoplasmic reticulum, mitochondrion	52.17	52.17
KRH40133	Soybean	mitochondrion	50.36	50.36
KRH01127	Soybean	mitochondrion	50.0	50.0
KRG99160	Soybean	mitochondrion	47.46	47.46
KRH45848	Soybean	mitochondrion	47.1	47.1
KRH19015	Soybean	cytosol	44.57	44.4
KRH02881	Soybean	mitochondrion	44.2	44.04
CDY23028	Canola	mitochondrion	34.06	43.52
KRH56957	Soybean	cytosol	29.35	33.06
KRH03426	Soybean	cytosol	29.35	33.06
KRH63406	Soybean	cytosol	29.35	32.66
KRH54504	Soybean	cytosol	28.99	32.26

Protein Annotations

EntrezGene:100818855	Gene3D:2.40.160.10	MapMan:24.4.1	EMBL:ACUP02000658	EMBL:BT094515	UniProt:C6TAH8
EnsemblPlantsGene:GLYMA_01G193700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0055085	InterPro:IPR023614
EnsemblPlants:KRH77123	ProteinID:KRH77123	ProteinID:KRH77123.1	PFAM:PF01459	PANTHER:PTHR11743	PANTHER:PTHR11743:SF29
InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniParc:UPI0001B16193	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:52826550..52830248

Molecular Weight (calculated)

29117.6 Da

IEP (calculated)

9.651

GRAVY (calculated)

-0.098

Length

276 amino acids

Sequence
(BLAST)

001: MSKGPGLFTD IGKKSKDLLT KDYSSDQKLT VSSYSVSGVT LTSTSVTKGG LSTGDVAALY KYKNTVIDVK LDTASTISTT LTFNDVLPST KTIASFKLPD
101: YNSGKLEVQY FHDHATLTTA VALKQSPVID VSATVGTPTI ALGAEAGYDT SSGGFTKYTA GISVTRPDSS ASVILGDKGD SIKASYLHHL DLLKKSAAVA
201: EITRKFSTNE NTFTVGGSFA VDPLTQVKAR LNNHGKLGAL LQHEIIPKSV FTVSGEIDTK ALDKNPRFGL AIALKP

Best Arabidopsis Sequence Match ( AT5G67500.3 )
(BLAST)

001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP

Arabidopsis Description

VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.