CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
extracellular: 25724908
mitochondrion: 27780359
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45848	Soybean	mitochondrion	98.19	98.19
Solyc01g010760.2.1	Tomato	plastid	77.17	77.17
VIT_01s0026g01650.t01	Wine grape	cytosol	76.81	76.81
PGSC0003DMT400002261	Potato	mitochondrion	76.81	76.81
KRG93501	Soybean	endoplasmic reticulum, mitochondrion	73.55	73.55
KRH18503	Soybean	mitochondrion	73.55	73.55
KRH40133	Soybean	mitochondrion	73.19	73.19
KRH01127	Soybean	mitochondrion	73.19	73.19
KRH28358	Soybean	mitochondrion	48.19	48.19
KRH77123	Soybean	endoplasmic reticulum, mitochondrion	47.46	47.46
KRH19015	Soybean	cytosol	44.93	44.77
KRH02881	Soybean	mitochondrion	44.57	44.4
KRH56957	Soybean	cytosol	38.77	43.67
KRH03426	Soybean	cytosol	38.04	42.86
KRH15450	Soybean	cytosol	42.75	42.6
KRH05595	Soybean	plastid	36.96	40.64
KRH63406	Soybean	cytosol	34.42	38.31
KRH54504	Soybean	cytosol	33.7	37.5

Protein Annotations

EntrezGene:100805016	Gene3D:2.40.160.10	MapMan:24.4.1	EMBL:ACUP02010982	EMBL:BT096907	UniProt:C6TGZ7
EnsemblPlantsGene:GLYMA_18G125500	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008308
GO:GO:0015698	GO:GO:0016020	GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614	EnsemblPlants:KRG99160
ProteinID:KRG99160	ProteinID:KRG99160.1	PFAM:PF01459	ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF31
InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniParc:UPI0001B16DE7	:	:

Description

hypothetical protein

Coordinates

chr18:+:16412734..16415271

Molecular Weight (calculated)

29791.1 Da

IEP (calculated)

7.917

GRAVY (calculated)

-0.208

Length

276 amino acids

Sequence
(BLAST)

001: MVKGPGLYSD IGKRARDLLF KDYQNDHKFT ITTYTSTGVE ITSTGVRKGE IYLADVSTKV KNKNITTDVK VDTNSNLRTI ITVDEPAPGL KTIFSFNFPD
101: QKSGKVELQY QHEYAGISTS IGLTANPVVN FSGVVGNNLV AVGTDLSFDT TSGNFTKYNA GLNITHADLI ASLTLNDKGD NLTASYYHIV NPLTNSAVGA
201: ELSHSFSGNE NILTFGTQHA LDPLTLLKAR VNNYGRASAL IQHDWTPRTR FSLVGEVDTG AIEKSAKVGL AVALKP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.