CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359
endoplasmic reticulum: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19015	Soybean	cytosol	95.67	95.67
VIT_11s0052g01030.t01	Wine grape	cytosol	70.04	70.04
Solyc07g008350.2.1	Tomato	cytosol, plastid	65.7	65.94
Bra006817.1-P	Field mustard	cytosol	61.37	62.04
CDX88625	Canola	cytosol	61.37	62.04
CDY11866	Canola	cytosol	61.37	62.04
AT5G57490.1	Thale cress	cytosol	59.57	60.22
Os03t0137500-01	Rice	mitochondrion	59.57	59.78
GSMUA_Achr8P14200_001	Banana	extracellular, plasma membrane	62.82	58.19
EER95548	Sorghum	cytosol, mitochondrion	56.68	56.88
TraesCS4B01G336100.1	Wheat	nucleus	54.51	55.11
TraesCS5A01G505700.1	Wheat	nucleus	54.15	54.74
TraesCS4D01G331900.1	Wheat	nucleus	54.15	54.74
Zm00001d027580_P001	Maize	mitochondrion	55.6	54.42
Bra002725.1-P	Field mustard	cytosol	31.05	54.09
Zm00001d027578_P001	Maize	peroxisome	47.29	51.37
CDY38301	Canola	cytosol	30.32	50.6
KRH40133	Soybean	mitochondrion	45.13	45.29
KRH28358	Soybean	mitochondrion	44.77	44.93
KRH18503	Soybean	mitochondrion	44.77	44.93
KRG93501	Soybean	endoplasmic reticulum, mitochondrion	44.4	44.57
KRH01127	Soybean	mitochondrion	44.4	44.57
KRG99160	Soybean	mitochondrion	44.4	44.57
KRH45848	Soybean	mitochondrion	44.04	44.2
KRH77123	Soybean	endoplasmic reticulum, mitochondrion	44.04	44.2
CDY25906	Canola	plasma membrane	48.74	40.18
KRH15450	Soybean	cytosol	40.07	40.07
Zm00001d048362_P002	Maize	endoplasmic reticulum, plasma membrane	51.99	38.81
KRH05595	Soybean	plastid	33.21	36.65
KRH03426	Soybean	cytosol	27.44	31.02
KRH56957	Soybean	cytosol	26.71	30.2
KRH63406	Soybean	cytosol	26.71	29.84
KRH54504	Soybean	cytosol	25.99	29.03

Protein Annotations

EntrezGene:100797369	Gene3D:2.40.160.10	MapMan:24.4.1	EMBL:ACUP02010328	EnsemblPlantsGene:GLYMA_17G064100	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0055085	UniProt:I1MSR7	InterPro:IPR023614	EnsemblPlants:KRH02881
ProteinID:KRH02881	ProteinID:KRH02881.1	PFAM:PF01459	PANTHER:PTHR11743	PANTHER:PTHR11743:SF48	InterPro:Porin_Euk/Tom40
InterPro:Porin_dom_sf	UniParc:UPI000233EC11	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:4930968..4937489

Molecular Weight (calculated)

29962.5 Da

IEP (calculated)

9.363

GRAVY (calculated)

-0.178

Length

277 amino acids

Sequence
(BLAST)

001: MANGPAPFSE IGKRAKDLLY KDYNFDHKFS LSIPNSTGLG LIATGLKKDK LFVGDISTLY KSGNTTVDVK VDTYSNIYTK VTVNDILHGT KAALSFNIPD
101: HKSGKLDVQY LHPHAAVDSS IGLNPSPLLE LSAAIGSKDL CLGAEVGFNT TSASFTKYNA GVAFNKPDFS VALMLADKGQ TLKASYIHYV DRPDGFTVAA
201: EISHRFSSLE NRFTIGSSQS IDPKTVLKTR FSDDGKAAFQ CQRAWRPNSL ITLSAEYDST KIFGSSTKFG LALALKP

Best Arabidopsis Sequence Match ( AT5G57490.1 )
(BLAST)

001: MGSSPAPFAD IGKKAKDLLN KDYIFDHKFT LTMLSATGTE FVATGLKKDD FFFGDISTLY KGQNTIVDLK IDSHSSVSTK VTLKNLLPSA KAVISFKIPD
101: HKSGKLDVQY VHPHATLNSS IGLNPTPLLD LSATIGSQNV CLGGEVSFDT ASSSLTKYNA GIGFNNQGVS AALILEDKGE SLRATYVHTV NPTTSFGAEL
201: IRRFSNYNNS FTVGSSHSVD QFTVVKTRFS NSGKAGMVVQ REWRPKSHIT FSAEYDSKAV TSSPKLGLAL ALKP

Arabidopsis Description

VDAC4Mitochondrial outer membrane protein porin 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.