Factsheet for GSMUA_Achr8P14200_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 1
mitochondrion 2
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0137500-01	Rice	mitochondrion	60.87	65.94
EER95548	Sorghum	cytosol, mitochondrion	59.2	64.13
VIT_11s0052g01030.t01	Wine grape	cytosol	58.86	63.54
KRH02881	Soybean	mitochondrion	58.19	62.82
KRH19015	Soybean	cytosol	57.86	62.45
Zm00001d027580_P001	Maize	mitochondrion	58.86	62.19
Solyc07g008350.2.1	Tomato	cytosol, plastid	56.52	61.23
TraesCS4B01G336100.1	Wheat	nucleus	55.85	60.95
TraesCS4D01G331900.1	Wheat	nucleus	55.52	60.58
TraesCS5A01G505700.1	Wheat	nucleus	55.52	60.58
Zm00001d027578_P001	Maize	peroxisome	51.51	60.39
CDX88625	Canola	cytosol	52.51	57.3
Bra006817.1-P	Field mustard	cytosol	52.51	57.3
CDY11866	Canola	cytosol	52.17	56.93
AT5G57490.1	Thale cress	cytosol	51.51	56.2
Bra002725.1-P	Field mustard	cytosol	27.76	52.2
GSMUA_Achr7P26190_001	Banana	cytosol	44.82	48.73
CDY38301	Canola	cytosol	26.42	47.59
Zm00001d048362_P002	Maize	endoplasmic reticulum, plasma membrane	58.19	46.9
GSMUA_Achr7P00060_001	Banana	cytosol	42.14	45.82
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	41.81	45.45
GSMUA_Achr5P08710_001	Banana	cytosol	41.81	45.45
GSMUA_AchrUn_...	Banana	cytosol	41.14	44.73
GSMUA_Achr6P04840_001	Banana	cytosol	38.8	42.49
GSMUA_Achr3P20500_001	Banana	cytosol	38.8	42.18
GSMUA_Achr7P08830_001	Banana	cytosol	37.79	41.09
CDY25906	Canola	plasma membrane	42.47	37.8

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0005886	GO:GO:0006810
GO:GO:0008150	GO:GO:0008308	GO:GO:0009605	GO:GO:0009607	GO:GO:0009617	GO:GO:0015698
GO:GO:0016020	GO:GO:0055085	GO:GO:0098656	EnsemblPlantsGene:GSMUA_Achr8G14200_001	EnsemblPlants:GSMUA_Achr8P14200_001	EnsemblPlants:GSMUA_Achr8T14200_001
InterPro:IPR023614	UniProt:M0TQC3	PFAM:PF01459	PANTHER:PTHR11743	PANTHER:PTHR11743:SF27	InterPro:Porin_Euk/Tom40
InterPro:Porin_dom_sf	UniParc:UPI000295FA5F	SEG:seg	:	:	:

Description

Mitochondrial outer membrane protein porin of 36 kDa [Source:GMGC_GENE;Acc:GSMUA_Achr8G14200_001]

Coordinates

chr8:+:10775824..10781651

Molecular Weight (calculated)

32671.4 Da

IEP (calculated)

8.686

GRAVY (calculated)

0.127

Length

299 amino acids

Sequence
(BLAST)

001: MFSAFWCFLM NWLLIFMYCN IRIKSLLLDC LHFVICIKSY LLNKDYNFDH KFIFSKTSDS GLGLTATGIK VNELFIGDIS TQYKSGKTVV DVKVDTNSNI
101: STTVTVNELL AGAKTSLSFK IPDQKSGKLD VHYLHDLVAF NSSIGLTPTP LLEFAAAIGS RELTLGAEIG FDSASASFTK YNAGLGFNKH DFSAALMLTD
201: KGETLKASYI HVLNPINGAA VAAEMIHKFN TNENGFTIGS SHNVDPLTMV KTRFSNSGKA AVLCQHQWRP KSFITLSAEY DPKAVSAPSK LGLALALKP

Best Arabidopsis Sequence Match ( AT5G57490.1 )
(BLAST)

001: MGSSPAPFAD IGKKAKDLLN KDYIFDHKFT LTMLSATGTE FVATGLKKDD FFFGDISTLY KGQNTIVDLK IDSHSSVSTK VTLKNLLPSA KAVISFKIPD
101: HKSGKLDVQY VHPHATLNSS IGLNPTPLLD LSATIGSQNV CLGGEVSFDT ASSSLTKYNA GIGFNNQGVS AALILEDKGE SLRATYVHTV NPTTSFGAEL
201: IRRFSNYNNS FTVGSSHSVD QFTVVKTRFS NSGKAGMVVQ REWRPKSHIT FSAEYDSKAV TSSPKLGLAL ALKP

Arabidopsis Description

VDAC4Mitochondrial outer membrane protein porin 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.