Factsheet for Os03t0137500-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95548	Sorghum	cytosol, mitochondrion	83.7	83.7
Zm00001d027580_P001	Maize	mitochondrion	82.97	80.92
TraesCS4B01G336100.1	Wheat	nucleus	78.26	78.83
TraesCS5A01G505700.1	Wheat	nucleus	78.26	78.83
TraesCS4D01G331900.1	Wheat	nucleus	77.9	78.47
Zm00001d027578_P001	Maize	peroxisome	68.48	74.12
GSMUA_Achr8P14200_001	Banana	extracellular, plasma membrane	65.94	60.87
KRH19015	Soybean	cytosol	60.14	59.93
KRH02881	Soybean	mitochondrion	59.78	59.57
VIT_11s0052g01030.t01	Wine grape	cytosol	59.42	59.21
Zm00001d048362_P002	Maize	endoplasmic reticulum, plasma membrane	77.17	57.41
CDY11866	Canola	cytosol	55.8	56.2
Solyc07g008350.2.1	Tomato	cytosol, plastid	56.16	56.16
CDX88625	Canola	cytosol	55.43	55.84
Bra006817.1-P	Field mustard	cytosol	54.71	55.11
AT5G57490.1	Thale cress	cytosol	53.62	54.01
Bra002725.1-P	Field mustard	cytosol	26.09	45.28
Os03t0202200-01	Rice	mitochondrion, nucleus, plasma membrane, plastid	43.12	42.96
Os01t0588200-01	Rice	mitochondrion, plasma membrane	42.75	42.91
Os05t0536200-01	Rice	mitochondrion	42.39	41.79
Os01t0715500-00	Rice	cytosol, mitochondrion, plasma membrane	30.43	40.19
CDY38301	Canola	cytosol	23.55	39.16
CDY25906	Canola	plasma membrane	43.12	35.42

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	EntrezGene:4331551	ProteinID:ABF93868.1	EMBL:AK060148	ProteinID:BAF10816.1
ProteinID:BAS82196.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0005886	GO:GO:0006810	GO:GO:0006811
GO:GO:0008150	GO:GO:0008308	GO:GO:0009605	GO:GO:0009607	GO:GO:0009617	GO:GO:0015288
GO:GO:0015698	GO:GO:0016020	GO:GO:0016021	GO:GO:0046930	GO:GO:0055085	InterPro:IPR023614
EnsemblPlantsGene:Os03g0137500	EnsemblPlants:Os03t0137500-01	PFAM:PF01459	PANTHER:PTHR11743	PANTHER:PTHR11743:SF27	InterPro:Porin_Euk/Tom40
InterPro:Porin_dom_sf	UniProt:Q10S27	UniParc:UPI0000DB4496	RefSeq:XP_015632202.1	RefSeq:XP_015632203.1	SEG:seg

Description

voltage-dependent anion channel 6, voltage-dependent anion-selective channel 6Similar to VDAC3.1. (Os03t0137500-01);Hypothetical conserved gene. (Os03t0137500-02);Similar to VDAC3.1. (Os03t0137500-03)

Coordinates

chr3:+:2069458..2073230

Molecular Weight (calculated)

29685.0 Da

IEP (calculated)

8.619

GRAVY (calculated)

-0.244

Length

276 amino acids

Sequence
(BLAST)

001: MSKGPAPFLN IGKRAKDLLY KDYNFDQKFS LTTTSNSGLG LTATGVKIDE LFIGDIQTQH KSGKTTVDVK IDSESRVSTT VTVDEALTGL KTSFSFRVPD
101: QKSGKLDLQY LHDHFALNST IGLTSTPLIE LAATIGTNEL SAGAEVGFDS TSASVTKYNS GICYNKHDFS AAVLLADKGE TLKASYIHTF NETNGATVAA
201: EVTHKLKTKE NYFTIGSSHA IDSSTLLKTR FSNGGKVGVL CQHEWRPKST VSISAEYDPK VVSSPSRFGV AIALKP

Best Arabidopsis Sequence Match ( AT5G57490.1 )
(BLAST)

001: MGSSPAPFAD IGKKAKDLLN KDYIFDHKFT LTMLSATGTE FVATGLKKDD FFFGDISTLY KGQNTIVDLK IDSHSSVSTK VTLKNLLPSA KAVISFKIPD
101: HKSGKLDVQY VHPHATLNSS IGLNPTPLLD LSATIGSQNV CLGGEVSFDT ASSSLTKYNA GIGFNNQGVS AALILEDKGE SLRATYVHTV NPTTSFGAEL
201: IRRFSNYNNS FTVGSSHSVD QFTVVKTRFS NSGKAGMVVQ REWRPKSHIT FSAEYDSKAV TSSPKLGLAL ALKP

Arabidopsis Description

VDAC4Mitochondrial outer membrane protein porin 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.