Factsheet for Os01t0588200-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
mitochondrion: 23027867
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G241200.1	Wheat	cytosol, golgi, unclear	92.0	92.0
TraesCS3A01G210600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	92.0	92.0
TraesCS3D01G213400.1	Wheat	cytosol	91.64	91.64
HORVU3Hr1G051010.2	Barley	cytosol, plasma membrane	90.91	90.91
EES03185	Sorghum	cytosol	90.18	90.18
Zm00001d044318_P001	Maize	cytosol, mitochondrion	88.73	88.73
Zm00001d011242_P002	Maize	cytosol	89.09	80.86
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	73.45	73.45
GSMUA_Achr7P00060_001	Banana	cytosol	71.64	71.64
GSMUA_Achr3P20500_001	Banana	cytosol	69.45	69.45
Os05t0536200-01	Rice	mitochondrion	67.27	66.07
Os01t0715500-00	Rice	cytosol, mitochondrion, plasma membrane	48.36	63.64
Os03t0137500-01	Rice	mitochondrion	42.91	42.75
Os03t0202200-01	Rice	mitochondrion, nucleus, plasma membrane, plastid	41.82	41.52
KRH03426	Soybean	cytosol	35.27	39.59
KRH56957	Soybean	cytosol	34.91	39.18
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	35.64	37.98
Solyc03g113210.2.1	Tomato	cytosol	32.0	37.29
PGSC0003DMT400065213	Potato	cytosol	32.0	36.82
KRH63406	Soybean	cytosol	30.91	34.27
KRH54504	Soybean	cytosol	29.82	33.06
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	17.82	30.06
CDY39954	Canola	extracellular	16.36	21.23
CDY01000	Canola	endoplasmic reticulum, plasma membrane	26.91	20.5

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	EntrezGene:4327665	EMBL:AJ251563	EMBL:AK070745	EMBL:AK104419
ProteinID:BAB89921.1	ProteinID:BAF05347.1	ProteinID:BAS72920.1	ProteinID:EAZ12509.1	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008308	GO:GO:0015288	GO:GO:0015698
GO:GO:0016020	GO:GO:0016021	GO:GO:0046930	GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614
EnsemblPlantsGene:Os01g0588200	EnsemblPlants:Os01t0588200-01	PFAM:PF01459	ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF33
InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniProt:Q7F4F8	UniParc:UPI00000AAD30	RefSeq:XP_015611950.1

Description

voltage-dependent anion channel 3, voltage-dependent anion-selective channel 3Voltage-dependent anion channel. (Os01t0588200-01);Voltage-dependent anion channel. (Os01t0588200-02)

Coordinates

chr1:-:22908290..22910674

Molecular Weight (calculated)

29893.4 Da

IEP (calculated)

7.927

GRAVY (calculated)

-0.235

Length

275 amino acids

Sequence
(BLAST)

001: MAPGLYTDIG KKTRDLLYRD YGTHHKFTLT TCTPEGVTIT AAGTRKNESV FGELQTQLKN KKLTVDVKAN SESDLLTTVT VDEFGTPGLK SILSLVVPDQ
101: RSGKLELQYL HEYAGINASV GLNSNPMVNL SGVFGSKELS VGVDVAFDTA TSNFTKYNAA LSLTNSDLIA SLHLNNHGDT LIASYYHLVK HHSNTAVGAE
201: LSHSFSRNES TLIFGSQHSL DPHTTVKARF NNYGMASALV QHEWRPKSLI TISGEVDTKA IEKSTKVGLS LVLKH

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.