Factsheet for TraesCS3A01G210600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, plastid
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 23895732
nucleus: 26228564
plastid: 28542341

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 28542341 doi

K Shi, J Gu, H Guo, L Zhao, Y Xie, H Xiong, J Li, S Zhao, X Song, L Liu

National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China., School of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, China.

msms PMID: 23895732 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks (CABiN), M316, The University of Western Australia , 35 Stirling Highway, Crawley, WA 6009, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G241200.1	Wheat	cytosol, golgi, unclear	99.27	99.27
TraesCS3D01G213400.1	Wheat	cytosol	98.91	98.91
HORVU3Hr1G051010.2	Barley	cytosol, plasma membrane	98.18	98.18
Os01t0588200-01	Rice	mitochondrion, plasma membrane	92.0	92.0
EES03185	Sorghum	cytosol	89.09	89.09
Zm00001d044318_P001	Maize	cytosol, mitochondrion	85.45	85.45
Zm00001d011242_P002	Maize	cytosol	87.64	79.54
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	72.0	72.0
GSMUA_Achr7P00060_001	Banana	cytosol	70.18	70.18
GSMUA_Achr3P20500_001	Banana	cytosol	68.36	68.36
TraesCS5A01G193700.1	Wheat	golgi, unclear	66.91	66.91
TraesCS4A01G046000.1	Wheat	plastid	43.27	42.96
TraesCS3A01G247900.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	50.91	42.3
TraesCS5A01G505700.1	Wheat	nucleus	41.09	41.24
KRH03426	Soybean	cytosol	34.55	38.78
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	36.36	38.76
KRH56957	Soybean	cytosol	34.18	38.37
PGSC0003DMT400065213	Potato	cytosol	32.73	37.66
Solyc03g113210.2.1	Tomato	cytosol	32.0	37.29
KRH63406	Soybean	cytosol	31.27	34.68
KRH54504	Soybean	cytosol	30.18	33.47
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	18.18	30.67
CDY39954	Canola	extracellular	16.73	21.7
CDY01000	Canola	endoplasmic reticulum, plasma membrane	26.18	19.94
TraesCS7A01G166600.1	Wheat	cytosol	32.73	17.44

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150
GO:GO:0008308	GO:GO:0016020	GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614	PFAM:PF01459
ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF33	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf
EnsemblPlantsGene:TraesCS3A01G210600	EnsemblPlants:TraesCS3A01G210600.1	TIGR:cd07306	:	:	:

Description

No Description!

Coordinates

chr3A:-:376784158..376786121

Molecular Weight (calculated)

29899.4 Da

IEP (calculated)

7.364

GRAVY (calculated)

-0.199

Length

275 amino acids

Sequence
(BLAST)

001: MAPGLYTDIG KKTRDLLYRD YCTHQKFTLT TCTPEGVAIT AAGTRKNESI FGELQTQLKN KNLTVDIKAN SESDLLTTFT VDEFATPGLK SILSLVVPDQ
101: RSGKLELQYL HEFAGINASV GLNPNPMVNL SGVFGSKELS VGVDVSFDTA TSNFTKYNAA LSLTYPDLIA SLHLNNHGDT LTASYYHLVK SHSSTAVGAE
201: LSHNFPRNES TLIFGSQHSL DPHTSVKARF NNYGMASALV QHEWRAKSLV TISGEVDTKA IEKSTKVGLS LVLKP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.