Factsheet for Solyc03g113210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065213	Potato	cytosol	92.37	91.21
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	41.53	37.98
KRH56957	Soybean	cytosol	38.14	36.73
KRH03426	Soybean	cytosol	37.29	35.92
Solyc01g010760.2.1	Tomato	plastid	41.53	35.51
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	40.25	34.55
GSMUA_Achr6P04840_001	Banana	cytosol	39.83	34.43
GSMUA_Achr7P08830_001	Banana	cytosol	39.41	33.82
Os01t0715500-00	Rice	cytosol, mitochondrion, plasma membrane	29.66	33.49
GSMUA_Achr7P00060_001	Banana	cytosol	38.98	33.45
KRH63406	Soybean	cytosol	34.75	33.06
Solyc02g067460.2.1	Tomato	plastid	38.56	32.97
Zm00001d020219_P004	Maize	cytosol	38.14	32.61
TraesCS3B01G241200.1	Wheat	cytosol, golgi, unclear	37.71	32.36
TraesCS3D01G213400.1	Wheat	cytosol	37.71	32.36
TraesCS3A01G210600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	37.29	32.0
HORVU3Hr1G051010.2	Barley	cytosol, plasma membrane	37.29	32.0
Os01t0588200-01	Rice	mitochondrion, plasma membrane	37.29	32.0
Zm00001d044318_P001	Maize	cytosol, mitochondrion	36.86	31.64
EES03185	Sorghum	cytosol	36.86	31.64
EER96631	Sorghum	cytosol	36.86	31.52
KRH54504	Soybean	cytosol	33.05	31.45
GSMUA_Achr3P20500_001	Banana	cytosol	36.44	31.27
TraesCS5D01G196100.1	Wheat	mitochondrion	36.44	31.27
TraesCS5B01G189000.1	Wheat	mitochondrion	36.44	31.27
TraesCS5A01G193700.1	Wheat	golgi, unclear	36.44	31.27
Os05t0536200-01	Rice	mitochondrion	36.86	31.07
HORVU5Hr1G124370.1	Barley	cytosol, mitochondrion, plastid	12.71	29.7
HORVU3Hr1G013220.1	Barley	cytosol	12.71	29.7
Zm00001d038840_P001	Maize	mitochondrion	34.32	29.35
EES18574	Sorghum	cytosol	33.9	28.99
Zm00001d011242_P002	Maize	cytosol	36.44	28.38
Zm00001d011135_P001	Maize	cytosol, mitochondrion, nucleus	33.05	28.16
EES03523	Sorghum	cytosol	33.05	28.16
TraesCS1B01G374200.1	Wheat	golgi, unclear	34.32	28.12
TraesCS1D01G361900.1	Wheat	golgi	33.9	27.78
Solyc02g092440.2.1	Tomato	plastid	32.2	27.54
Solyc03g044010.2.1	Tomato	cytosol, nucleus, unclear	31.36	27.01
Solyc03g058920.2.1	Tomato	plastid	37.71	26.33
TraesCS3B01G276600.1	Wheat	cytosol, plasma membrane, plastid	30.51	25.17
Solyc07g008350.2.1	Tomato	cytosol, plastid	29.24	25.0
Zm00001d043661_P001	Maize	cytosol	29.24	24.91
HORVU1Hr1G080370.2	Barley	plastid	32.63	23.33
TraesCS3D01G247900.1	Wheat	cytosol	31.78	23.29
Zm00001d005649_P001	Maize	cytosol	10.59	23.15
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	15.68	22.7
TraesCS3A01G247900.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	30.08	21.45
TraesCS7D01G167200.1	Wheat	mitochondrion	23.73	20.59
HORVU3Hr1G067610.2	Barley	mitochondrion	28.81	19.6
CDY01000	Canola	endoplasmic reticulum, plasma membrane	26.69	17.45
CDY39954	Canola	extracellular	15.25	16.98
TraesCS7A01G166600.1	Wheat	cytosol	28.39	12.98
HORVU7Hr1G034770.11	Barley	plastid	25.42	8.71

Protein Annotations

EnsemblPlants:Solyc03g113210.2.1	EnsemblPlantsGene:Solyc03g113210.2	Gene3D:2.40.160.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0055085	InterPro:IPR023614	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	PANTHER:PTHR11743	PANTHER:PTHR11743:SF31
PFAM:PF01459	UniParc:UPI0002767A3D	UniProt:K4BKH4	MapMan:24.4.1	:	:

Description

No Description!

Coordinates

chr3:+:63431767..63433056

Molecular Weight (calculated)

25140.3 Da

IEP (calculated)

6.498

GRAVY (calculated)

0.212

Length

236 amino acids

Sequence
(BLAST)

001: MNKQPGIFSD IGKNATDLLY GDYIRKSPVH NLLDWGLYFK CQVNDIVPGL SSLVKLSVPD QRSNKVEVQY MNNYFGVATG ISLEKTPLLS LSGVTGIGFF
101: SIGAEIAFDT ATKTLAECGG GLSFDTDVLS ASLTLSNNAD TLRAHCYRPI LPLTSTGVAA ELTHRFVNNQ TTLALGAQHC LFPCMLIKAR VTSDGSLGAL
201: VQNNIFSALS LSIGAEMNAM DAANTAKLGL ALIFNP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.