Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 3
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
mitochondrion:
12746528
mitochondrion: 15276442 plasma membrane: 18260611 mitochondrion: 19010998 nucleus: 19621931 plastid: 21433289 mitochondrion: 23027867 nucleus: 26035336 plasma membrane: 27800704 plastid: 27992503 extracellular: 28232208 |
msms PMID:
15276442
doi
Risø National Laboratory, Plant Research Department, P.O. Box 49, DK-4000 Roskilde, Denmark.
msms PMID:
23027867
doi
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
12746528
doi
Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley 6009, Australia.
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID:
19010998
doi
Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID:
21433289
doi
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d038840_P001 | Maize | mitochondrion | 79.64 | 80.8 |
EES18574 | Sorghum | cytosol | 78.93 | 80.07 |
TraesCS1D01G361900.1 | Wheat | golgi | 73.93 | 71.88 |
TraesCS1B01G374200.1 | Wheat | golgi, unclear | 73.57 | 71.53 |
Zm00001d011135_P001 | Maize | cytosol, mitochondrion, nucleus | 68.93 | 69.68 |
GSMUA_Achr7P00060_001 | Banana | cytosol | 68.21 | 69.45 |
GSMUA_Achr7P23900_001 | Banana | cytosol, unclear | 68.21 | 69.45 |
HORVU5Hr1G124370.1 | Barley | cytosol, mitochondrion, plastid | 25.0 | 69.31 |
HORVU3Hr1G013220.1 | Barley | cytosol | 24.64 | 68.32 |
Os01t0588200-01 | Rice | mitochondrion, plasma membrane | 66.07 | 67.27 |
Os01t0715500-00 | Rice | cytosol, mitochondrion, plasma membrane | 48.93 | 65.55 |
GSMUA_Achr3P20500_001 | Banana | cytosol | 63.93 | 65.09 |
HORVU1Hr1G080370.2 | Barley | plastid | 71.43 | 60.61 |
Os03t0202200-01 | Rice | mitochondrion, nucleus, plasma membrane, plastid | 43.93 | 44.4 |
Os03t0137500-01 | Rice | mitochondrion | 41.79 | 42.39 |
KRH56957 | Soybean | cytosol | 33.93 | 38.78 |
KRH03426 | Soybean | cytosol | 33.93 | 38.78 |
VIT_17s0000g05690.t01 | Wine grape | cytosol, mitochondrion | 34.64 | 37.6 |
PGSC0003DMT400065213 | Potato | cytosol | 31.79 | 37.24 |
Solyc03g113210.2.1 | Tomato | cytosol | 31.07 | 36.86 |
KRH63406 | Soybean | cytosol | 31.43 | 35.48 |
KRH54504 | Soybean | cytosol | 30.0 | 33.87 |
AT5G37610.1 | Thale cress | endoplasmic reticulum, extracellular | 18.21 | 31.29 |
CDY39954 | Canola | extracellular | 15.0 | 19.81 |
CDY01000 | Canola | endoplasmic reticulum, plasma membrane | 24.29 | 18.84 |
Protein Annotations
Gene3D:2.40.160.10 | MapMan:24.4.1 | EntrezGene:4339446 | ProteinID:AAT39214.1 | EMBL:AJ251562 | EMBL:AK071833 |
ProteinID:BAF18076.1 | ProteinID:BAS95080.1 | ProteinID:EEE64499.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 | GO:GO:0006810 |
GO:GO:0006811 | GO:GO:0008150 | GO:GO:0015288 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046930 |
GO:GO:0055085 | InterPro:IPR023614 | EnsemblPlantsGene:Os05g0536200 | EnsemblPlants:Os05t0536200-01 | PFAM:PF01459 | PANTHER:PTHR11743 |
PANTHER:PTHR11743:SF34 | InterPro:Porin_Euk/Tom40 | InterPro:Porin_dom_sf | UniProt:Q6L5I5 | UniParc:UPI00000A03C3 | RefSeq:XP_015639259.1 |
SEG:seg | : | : | : | : | : |
Description
voltage-dependent anion channel 2, voltage-dependent anion-selective channel 2Voltage-dependent anion channel. (Os05t0536200-01)
Coordinates
chr5:+:26628171..26631476
Molecular Weight (calculated)
29603.9 Da
IEP (calculated)
9.110
GRAVY (calculated)
-0.098
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAPPAGP GLYSDIGKKA RDLLYRDYHT DQKFTLTTYA ANGAAITVAG TKKNESIFSE IQSQVKNNNV SVDVKATSDS KLITTFTVHD LGTPGLKGIL
101: SIPFPYQKSA KAEVQYLHPH AGLNAIVGLN ANPLVSFSGV FGTGAFAVGT DVAFDTATGD FTKYNAGLSH TTPDLTAALL LNNKGDSLAA SYYHKVSKTS
201: AVGAELAHSF SSNENTLTFG TQHALDELTT VKARFNNFGM ASALIQHEFR PKSLVTISTE VDTKAIDKSS KVGLSLVLKP
101: SIPFPYQKSA KAEVQYLHPH AGLNAIVGLN ANPLVSFSGV FGTGAFAVGT DVAFDTATGD FTKYNAGLSH TTPDLTAALL LNNKGDSLAA SYYHKVSKTS
201: AVGAELAHSF SSNENTLTFG TQHALDELTT VKARFNNFGM ASALIQHEFR PKSLVTISTE VDTKAIDKSS KVGLSLVLKP
001: MVKGPGLYTE IGKKARDLLY RDYQGDQKFS VTTYSSTGVA ITTTGTNKGS LFLGDVATQV KNNNFTADVK VSTDSSLLTT LTFDEPAPGL KVIVQAKLPD
101: HKSGKAEVQY FHDYAGISTS VGFTATPIVN FSGVVGTNGL SLGTDVAYNT ESGNFKHFNA GFNFTKDDLT ASLILNDKGE KLNASYYQIV SPSTVVGAEI
201: SHNFTTKENA ITVGTQHALD PLTTVKARVN NAGVANALIQ HEWRPKSFFT VSGEVDSKAI DKSAKVGIAL ALKP
101: HKSGKAEVQY FHDYAGISTS VGFTATPIVN FSGVVGTNGL SLGTDVAYNT ESGNFKHFNA GFNFTKDDLT ASLILNDKGE KLNASYYQIV SPSTVVGAEI
201: SHNFTTKENA ITVGTQHALD PLTTVKARVN NAGVANALIQ HEWRPKSFFT VSGEVDSKAI DKSAKVGIAL ALKP
Arabidopsis Description
VDAC3Mitochondrial outer membrane protein porin 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMX3]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.