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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 3
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:mitochondrion
MultiLoc:cytosol
Plant-mPloc:mitochondrion
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
mitochondrion: 12746528
mitochondrion: 15276442
plasma membrane: 18260611
mitochondrion: 19010998
nucleus: 19621931
plastid: 21433289
mitochondrion: 23027867
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503
extracellular: 28232208
msms PMID: 15276442 doi
BK Kristensen, P Askerlund, NV Bykova, H Egsgaard, IM Møller
Risø National Laboratory, Plant Research Department, P.O. Box 49, DK-4000 Roskilde, Denmark.
msms PMID: 23027867 doi
G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 12746528 doi
JL Heazlewood, KA Howell, J Whelan, AH Millar
Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley 6009, Australia.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 19010998 doi
S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar
Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d038840_P001 Maize mitochondrion 79.64 80.8
EES18574 Sorghum cytosol 78.93 80.07
TraesCS1D01G361900.1 Wheat golgi 73.93 71.88
TraesCS1B01G374200.1 Wheat golgi, unclear 73.57 71.53
Zm00001d011135_P001 Maize cytosol, mitochondrion, nucleus 68.93 69.68
GSMUA_Achr7P00060_001 Banana cytosol 68.21 69.45
GSMUA_Achr7P23900_001 Banana cytosol, unclear 68.21 69.45
HORVU5Hr1G124370.1 Barley cytosol, mitochondrion, plastid 25.0 69.31
HORVU3Hr1G013220.1 Barley cytosol 24.64 68.32
Os01t0588200-01 Rice mitochondrion, plasma membrane 66.07 67.27
Os01t0715500-00 Rice cytosol, mitochondrion, plasma membrane 48.93 65.55
GSMUA_Achr3P20500_001 Banana cytosol 63.93 65.09
HORVU1Hr1G080370.2 Barley plastid 71.43 60.61
Os03t0202200-01 Rice mitochondrion, nucleus, plasma membrane, plastid 43.93 44.4
Os03t0137500-01 Rice mitochondrion 41.79 42.39
KRH56957 Soybean cytosol 33.93 38.78
KRH03426 Soybean cytosol 33.93 38.78
VIT_17s0000g05690.t01 Wine grape cytosol, mitochondrion 34.64 37.6
PGSC0003DMT400065213 Potato cytosol 31.79 37.24
Solyc03g113210.2.1 Tomato cytosol 31.07 36.86
KRH63406 Soybean cytosol 31.43 35.48
KRH54504 Soybean cytosol 30.0 33.87
AT5G37610.1 Thale cress endoplasmic reticulum, extracellular 18.21 31.29
CDY39954 Canola extracellular 15.0 19.81
CDY01000 Canola endoplasmic reticulum, plasma membrane 24.29 18.84
Protein Annotations
Gene3D:2.40.160.10MapMan:24.4.1EntrezGene:4339446ProteinID:AAT39214.1EMBL:AJ251562EMBL:AK071833
ProteinID:BAF18076.1ProteinID:BAS95080.1ProteinID:EEE64499.1GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005741GO:GO:0006810
GO:GO:0006811GO:GO:0008150GO:GO:0015288GO:GO:0016020GO:GO:0016021GO:GO:0046930
GO:GO:0055085InterPro:IPR023614EnsemblPlantsGene:Os05g0536200EnsemblPlants:Os05t0536200-01PFAM:PF01459PANTHER:PTHR11743
PANTHER:PTHR11743:SF34InterPro:Porin_Euk/Tom40InterPro:Porin_dom_sfUniProt:Q6L5I5UniParc:UPI00000A03C3RefSeq:XP_015639259.1
SEG:seg:::::
Description
voltage-dependent anion channel 2, voltage-dependent anion-selective channel 2Voltage-dependent anion channel. (Os05t0536200-01)
Coordinates
chr5:+:26628171..26631476
Molecular Weight (calculated)
29603.9 Da
IEP (calculated)
9.110
GRAVY (calculated)
-0.098
Length
280 amino acids
Sequence
(BLAST)
001: MAAAAPPAGP GLYSDIGKKA RDLLYRDYHT DQKFTLTTYA ANGAAITVAG TKKNESIFSE IQSQVKNNNV SVDVKATSDS KLITTFTVHD LGTPGLKGIL
101: SIPFPYQKSA KAEVQYLHPH AGLNAIVGLN ANPLVSFSGV FGTGAFAVGT DVAFDTATGD FTKYNAGLSH TTPDLTAALL LNNKGDSLAA SYYHKVSKTS
201: AVGAELAHSF SSNENTLTFG TQHALDELTT VKARFNNFGM ASALIQHEFR PKSLVTISTE VDTKAIDKSS KVGLSLVLKP
Best Arabidopsis Sequence Match ( AT5G15090.1 )
(BLAST)
001: MVKGPGLYTE IGKKARDLLY RDYQGDQKFS VTTYSSTGVA ITTTGTNKGS LFLGDVATQV KNNNFTADVK VSTDSSLLTT LTFDEPAPGL KVIVQAKLPD
101: HKSGKAEVQY FHDYAGISTS VGFTATPIVN FSGVVGTNGL SLGTDVAYNT ESGNFKHFNA GFNFTKDDLT ASLILNDKGE KLNASYYQIV SPSTVVGAEI
201: SHNFTTKENA ITVGTQHALD PLTTVKARVN NAGVANALIQ HEWRPKSFFT VSGEVDSKAI DKSAKVGIAL ALKP
Arabidopsis Description
VDAC3Mitochondrial outer membrane protein porin 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMX3]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.