Factsheet for Solyc07g008350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0052g01030.t01	Wine grape	cytosol	67.39	67.15
KRH19015	Soybean	cytosol	66.3	66.06
KRH02881	Soybean	mitochondrion	65.94	65.7
CDX88625	Canola	cytosol	62.32	62.77
CDY11866	Canola	cytosol	62.32	62.77
Bra006817.1-P	Field mustard	cytosol	61.96	62.41
AT5G57490.1	Thale cress	cytosol	60.51	60.95
GSMUA_Achr8P14200_001	Banana	extracellular, plasma membrane	61.23	56.52
Os03t0137500-01	Rice	mitochondrion	56.16	56.16
Bra002725.1-P	Field mustard	cytosol	32.25	55.97
TraesCS5A01G505700.1	Wheat	nucleus	53.62	54.01
TraesCS4B01G336100.1	Wheat	nucleus	53.62	54.01
TraesCS4D01G331900.1	Wheat	nucleus	53.26	53.65
EER95548	Sorghum	cytosol, mitochondrion	53.26	53.26
Zm00001d027580_P001	Maize	mitochondrion	53.99	52.65
CDY38301	Canola	cytosol	29.71	49.4
Solyc01g010760.2.1	Tomato	plastid	48.55	48.55
Zm00001d027578_P001	Maize	peroxisome	44.2	47.84
Solyc02g067460.2.1	Tomato	plastid	47.1	47.1
Solyc02g092440.2.1	Tomato	plastid	45.65	45.65
Solyc03g044010.2.1	Tomato	cytosol, nucleus, unclear	44.2	44.53
CDY25906	Canola	plasma membrane	51.09	41.96
Zm00001d048362_P002	Maize	endoplasmic reticulum, plasma membrane	50.72	37.74
Solyc03g058920.2.1	Tomato	plastid	44.2	36.09
Solyc03g113210.2.1	Tomato	cytosol	25.0	29.24

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0005886	GO:GO:0006810
GO:GO:0008150	GO:GO:0008308	GO:GO:0009605	GO:GO:0009607	GO:GO:0009617	GO:GO:0015698
GO:GO:0016020	GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614	UniProt:K4CBV4	PFAM:PF01459
ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF27	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf
EnsemblPlantsGene:Solyc07g008350.2	EnsemblPlants:Solyc07g008350.2.1	UniParc:UPI000276B400	:	:	:

Description

Mitochondrial outer membrane protein porin 4 [Source:Projected from Arabidopsis thaliana (AT5G57490) UniProtKB/Swiss-Prot;Acc:Q9FKM2]

Coordinates

chr7:+:3130909..3139460

Molecular Weight (calculated)

29918.6 Da

IEP (calculated)

9.554

GRAVY (calculated)

-0.209

Length

276 amino acids

Sequence
(BLAST)

001: MEQSPAPFSE IGRRARDLLT KDYSYDQKFT FSIPSSSGMG ITATGVKKDQ IFIGDISTQY KLGSTVVDIK VDTYSNVSTK VTLVDVFRST KLSLGFNIPD
101: HKSGKLDVQY LHQHAAINSS IGLNPSPLLE LSVAIGNKDL ALGGEIGFNT ASSSFTKCNA GLSFNKPDFS AALMLTDRGQ AVKASYVHLV DPTNGTEVGA
201: EMIHRLSTYE NSFSIGSAHK VDSLTSLKTR FSDNGKVAML YQREWRPKSL VTFSAEYDTK AKSSVPKLGL ALALKP

Best Arabidopsis Sequence Match ( AT5G57490.1 )
(BLAST)

001: MGSSPAPFAD IGKKAKDLLN KDYIFDHKFT LTMLSATGTE FVATGLKKDD FFFGDISTLY KGQNTIVDLK IDSHSSVSTK VTLKNLLPSA KAVISFKIPD
101: HKSGKLDVQY VHPHATLNSS IGLNPTPLLD LSATIGSQNV CLGGEVSFDT ASSSLTKYNA GIGFNNQGVS AALILEDKGE SLRATYVHTV NPTTSFGAEL
201: IRRFSNYNNS FTVGSSHSVD QFTVVKTRFS NSGKAGMVVQ REWRPKSHIT FSAEYDSKAV TSSPKLGLAL ALKP

Arabidopsis Description

VDAC4Mitochondrial outer membrane protein porin 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.