Factsheet for Solyc03g044010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023484	Potato	cytosol	98.18	98.18
Solyc02g092440.2.1	Tomato	plastid	88.69	88.04
VIT_07s0129g00170.t01	Wine grape	cytosol	77.74	77.17
VIT_07s0129g00100.t01	Wine grape	cytosol	31.39	75.44
KRH28358	Soybean	mitochondrion	74.09	73.55
Bra031839.1-P	Field mustard	mitochondrion	17.15	73.44
KRH77123	Soybean	endoplasmic reticulum, mitochondrion	73.36	72.83
CDY43581	Canola	mitochondrion	16.79	71.88
CDY18662	Canola	cytosol	68.98	68.48
Bra037844.1-P	Field mustard	cytosol, mitochondrion, nucleus	68.98	68.48
CDY36497	Canola	cytosol, nucleus, plastid	68.25	67.75
CDX81312	Canola	cytosol, mitochondrion, nucleus	68.25	67.75
CDY08723	Canola	cytosol, nucleus, plastid	67.88	67.39
Bra024444.1-P	Field mustard	cytosol, nucleus, plastid	67.52	67.03
EER92681	Sorghum	mitochondrion	66.06	65.82
Zm00001d048149_P002	Maize	mitochondrion	65.69	65.45
GSMUA_AchrUn_...	Banana	cytosol	64.96	64.73
Zm00001d028102_P001	Maize	mitochondrion	64.96	64.73
Bra012915.1-P	Field mustard	cytosol, mitochondrion, nucleus	64.6	64.13
GSMUA_Achr7P26190_001	Banana	cytosol	64.23	64.0
TraesCS4D01G258900.1	Wheat	cytosol	63.87	63.64
Os03t0202200-01	Rice	mitochondrion, nucleus, plasma membrane, plastid	64.23	63.54
HORVU4Hr1G070150.3	Barley	plasma membrane	63.87	63.18
TraesCS4B01G259600.1	Wheat	cytosol	63.87	63.18
TraesCS4A01G046000.1	Wheat	plastid	63.87	63.18
CDY02103	Canola	cytosol, mitochondrion, nucleus	63.5	63.04
GSMUA_Achr5P08710_001	Banana	cytosol	62.41	62.18
AT5G67500.1	Thale cress	cytosol, mitochondrion, nucleus	66.79	60.0
AT3G49920.1	Thale cress	cytosol	47.81	57.96
Solyc02g067460.2.1	Tomato	plastid	50.73	50.36
Solyc01g010760.2.1	Tomato	plastid	48.91	48.55
Solyc07g008350.2.1	Tomato	cytosol, plastid	44.53	44.2
CDY23028	Canola	mitochondrion	33.58	42.59
Solyc03g058920.2.1	Tomato	plastid	50.37	40.83
Solyc03g113210.2.1	Tomato	cytosol	27.01	31.36

Protein Annotations

EnsemblPlants:Solyc03g044010.2.1	EnsemblPlantsGene:Solyc03g044010.2	Gene3D:2.40.160.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0055085	InterPro:IPR023614	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	PANTHER:PTHR11743	PANTHER:PTHR11743:SF29
PFAM:PF01459	UniParc:UPI0002768169	UniProt:K4BG21	MapMan:24.4.1	:	:

Description

No Description!

Coordinates

chr3:-:7802530..7806433

Molecular Weight (calculated)

29051.8 Da

IEP (calculated)

8.973

GRAVY (calculated)

-0.014

Length

274 amino acids

Sequence
(BLAST)

001: MGPGLFSDIG KKAKDLLTKD YIADQKLSIS TYSDTGVALT STAVKKGGLS TGDVGALYKY KNTLIDVKVD TGSNILTTLT LTDIVPSTKT IASLKFPDYS
101: SGRLETQYFH HHATFTTAVA LKQCPAVDLS ITLGTPTFAL GAEASYETAT SKLTKYTAGI SVTKPDSCAA IILGDKGDTI KASYIHHMDA LKTTAATGEI
201: TRRFSTNENT FTVGGSYAVD CLTIVKLKLN NHGSLGAVLQ HEVIPKSLLT ISSEFDTKAL DKTPKFGVAL ALKP

Best Arabidopsis Sequence Match ( AT5G67500.3 )
(BLAST)

001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP

Arabidopsis Description

VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.