CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048149_P002	Maize	mitochondrion	97.09	97.09
Zm00001d028102_P001	Maize	mitochondrion	96.36	96.36
Os03t0202200-01	Rice	mitochondrion, nucleus, plasma membrane, plastid	87.27	86.64
HORVU4Hr1G070150.3	Barley	plasma membrane	82.18	81.59
TraesCS4D01G258900.1	Wheat	cytosol	81.45	81.45
TraesCS4B01G259600.1	Wheat	cytosol	81.82	81.23
TraesCS4A01G046000.1	Wheat	plastid	81.82	81.23
GSMUA_Achr7P26190_001	Banana	cytosol	72.73	72.73
GSMUA_AchrUn_...	Banana	cytosol	72.0	72.0
CDY43581	Canola	mitochondrion	16.73	71.88
Bra031839.1-P	Field mustard	mitochondrion	16.36	70.31
GSMUA_Achr5P08710_001	Banana	cytosol	68.36	68.36
Solyc02g092440.2.1	Tomato	plastid	66.91	66.67
PGSC0003DMT400055247	Potato	cytosol	66.91	66.67
KRH28358	Soybean	mitochondrion	66.91	66.67
KRH77123	Soybean	endoplasmic reticulum, mitochondrion	66.55	66.3
PGSC0003DMT400023484	Potato	cytosol	65.82	66.06
Solyc03g044010.2.1	Tomato	cytosol, nucleus, unclear	65.82	66.06
VIT_07s0129g00170.t01	Wine grape	cytosol	64.73	64.49
VIT_07s0129g00100.t01	Wine grape	cytosol	26.55	64.04
CDY08723	Canola	cytosol, nucleus, plastid	61.09	60.87
CDY36497	Canola	cytosol, nucleus, plastid	60.73	60.51
Bra024444.1-P	Field mustard	cytosol, nucleus, plastid	60.73	60.51
CDY18662	Canola	cytosol	60.36	60.14
Bra037844.1-P	Field mustard	cytosol, mitochondrion, nucleus	60.36	60.14
CDX81312	Canola	cytosol, mitochondrion, nucleus	60.0	59.78
Bra012915.1-P	Field mustard	cytosol, mitochondrion, nucleus	57.82	57.61
CDY02103	Canola	cytosol, mitochondrion, nucleus	57.09	56.88
AT3G49920.1	Thale cress	cytosol	45.82	55.75
KRH15450	Soybean	cytosol	55.64	55.23
KRH05595	Soybean	plastid	48.73	53.39
AT5G67500.1	Thale cress	cytosol, mitochondrion, nucleus	58.18	52.46
EER96631	Sorghum	cytosol	45.45	45.29
EES18574	Sorghum	cytosol	45.09	44.93
EES03185	Sorghum	cytosol	42.18	42.18
EER95548	Sorghum	cytosol, mitochondrion	42.18	42.03
VIT_18s0001g09120.t01	Wine grape	mitochondrion	12.36	40.48
EES03523	Sorghum	cytosol	40.36	40.07
CDY23028	Canola	mitochondrion	29.82	37.96

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	EntrezGene:8054233	UniProt:C5WTT2	EnsemblPlants:EER92681	ProteinID:EER92681
ProteinID:EER92681.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008308
GO:GO:0015698	GO:GO:0016020	GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614	PFAM:PF01459
ScanProsite:PS00558	PANTHER:PTHR11743	PANTHER:PTHR11743:SF29	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf
EnsemblPlantsGene:SORBI_3001G465800	unigene:Sbi.2267	UniParc:UPI0001A828E5	RefSeq:XP_002465683.1	:	:

Description

hypothetical protein

Coordinates

chr1:+:73950063..73953660

Molecular Weight (calculated)

29184.8 Da

IEP (calculated)

9.659

GRAVY (calculated)

-0.165

Length

275 amino acids

Sequence
(BLAST)

001: MKGPGLFSDI GKKAKDLLTK DYTYDQKLTI STASASGVGL TSTAVKKGGL YSLDVSSVYK YKNTTVDVKV DTESNISTTL TVLDALPSTK LVTSVKLPDY
101: NSGKVELQYF HENATFATVV GTKPTPVIDL SGTVGAQGVA FGAEAGYDTA TGKFTKYTAA IGVTKPDYHA AFILADKGDT IKVSGVYHFD EKQKASAVAE
201: LTRRLSTNQN TLTVGGLYTV DPQTSVKARL NNTGTLAALL QHELKPKSVL TISGEFDTKA LDRPPKFGLA LALKP

Best Arabidopsis Sequence Match ( AT5G67500.3 )
(BLAST)

001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP

Arabidopsis Description

VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
SUBAcon: [cytosol,nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.