CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77123	Soybean	endoplasmic reticulum, mitochondrion	97.1	97.1
CDY43581	Canola	mitochondrion	18.48	79.69
VIT_07s0129g00170.t01	Wine grape	cytosol	78.62	78.62
Bra031839.1-P	Field mustard	mitochondrion	18.12	78.12
PGSC0003DMT400055247	Potato	cytosol	75.72	75.72
Solyc02g092440.2.1	Tomato	plastid	75.0	75.0
PGSC0003DMT400023484	Potato	cytosol	74.28	74.82
Solyc03g044010.2.1	Tomato	cytosol, nucleus, unclear	73.55	74.09
VIT_07s0129g00100.t01	Wine grape	cytosol	30.43	73.68
CDY18662	Canola	cytosol	73.19	73.19
Bra037844.1-P	Field mustard	cytosol, mitochondrion, nucleus	72.83	72.83
CDX81312	Canola	cytosol, mitochondrion, nucleus	72.46	72.46
CDY36497	Canola	cytosol, nucleus, plastid	71.74	71.74
CDY08723	Canola	cytosol, nucleus, plastid	71.38	71.38
Bra024444.1-P	Field mustard	cytosol, nucleus, plastid	71.01	71.01
Bra012915.1-P	Field mustard	cytosol, mitochondrion, nucleus	68.12	68.12
TraesCS4D01G258900.1	Wheat	cytosol	67.39	67.64
TraesCS4B01G259600.1	Wheat	cytosol	67.39	67.15
TraesCS4A01G046000.1	Wheat	plastid	67.39	67.15
GSMUA_Achr7P26190_001	Banana	cytosol	66.67	66.91
GSMUA_AchrUn_...	Banana	cytosol	66.67	66.91
EER92681	Sorghum	mitochondrion	66.67	66.91
HORVU4Hr1G070150.3	Barley	plasma membrane	67.03	66.79
CDY02103	Canola	cytosol, mitochondrion, nucleus	66.67	66.67
Zm00001d048149_P002	Maize	mitochondrion	65.94	66.18
GSMUA_Achr5P08710_001	Banana	cytosol	65.22	65.45
Zm00001d028102_P001	Maize	mitochondrion	65.22	65.45
Os03t0202200-01	Rice	mitochondrion, nucleus, plasma membrane, plastid	64.86	64.62
AT5G67500.1	Thale cress	cytosol, mitochondrion, nucleus	69.93	63.28
AT3G49920.1	Thale cress	cytosol	50.72	61.95
KRH15450	Soybean	cytosol	59.78	59.57
KRH05595	Soybean	plastid	50.36	55.38
KRH18503	Soybean	mitochondrion	53.26	53.26
KRG93501	Soybean	endoplasmic reticulum, mitochondrion	52.9	52.9
KRH40133	Soybean	mitochondrion	50.72	50.72
KRH01127	Soybean	mitochondrion	50.36	50.36
KRG99160	Soybean	mitochondrion	48.19	48.19
KRH45848	Soybean	mitochondrion	47.83	47.83
KRH19015	Soybean	cytosol	45.29	45.13
CDY23028	Canola	mitochondrion	35.14	44.91
KRH02881	Soybean	mitochondrion	44.93	44.77
KRH63406	Soybean	cytosol	29.35	32.66
KRH54504	Soybean	cytosol	28.99	32.26
KRH56957	Soybean	cytosol	28.62	32.24
KRH03426	Soybean	cytosol	28.62	32.24

Protein Annotations

EntrezGene:100790578	Gene3D:2.40.160.10	MapMan:24.4.1	EMBL:ACUP02006746	EMBL:BT097416	UniProt:C6TID5
EnsemblPlantsGene:GLYMA_11G048200	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0055085	InterPro:IPR023614
EnsemblPlants:KRH28358	ProteinID:KRH28358	ProteinID:KRH28358.1	PFAM:PF01459	PANTHER:PTHR11743	PANTHER:PTHR11743:SF29
InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniParc:UPI0001B16AFE	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:3590708..3594278

Molecular Weight (calculated)

29209.9 Da

IEP (calculated)

9.848

GRAVY (calculated)

-0.090

Length

276 amino acids

Sequence
(BLAST)

001: MSKGPGLFTD IGKKSKDLLT KDYNSDQKLT ISSYSISGVA LTSTSVKKGG LSTGDVAALY KYKNTIIDVK LDTASTISTT LTFNDVLPST KTIASFKLPD
101: YNSGKLEVQY FHDHATLTTA VALKQSPVID VSATVGTPTI ALGAEAGYDT SSGGFTKYTA GISVTRPDSS ASVILGDKGD SIKASYLHHL DLLKKSAAVA
201: EITRKFSTNE NIFTVGGSFA VDPLTQVKAR LNNHGKLGAL LQHEIIPKSV FTVSGEIDTK ALDKKPRFGL AIALKP

Best Arabidopsis Sequence Match ( AT5G67500.3 )
(BLAST)

001: MSKGPGLFTD IGKKAKDLLT RDYNSDQKFS ISTYSASGVA LTSTALKKGG VHAADVATQY KYKNALFDVK IDTDSSVLTT VTLTEILPST KAIASFKVPD
101: YNSAKLEVQY FHDHATVTAA AALKQNPLID ITATLGSPVI SFGAEAGYDT TSKTFTKYNA GISVTKPDAC LSIILGDKGD SLKASYLHHF DEFKRTAAVG
201: EVYRKFSTNE NTITVGGLYA IDHSTAVKAK LNNHGTLGAL LQHEVLPRSL VTVSSEIDTK ALEKHPRFGL SLALKP

Arabidopsis Description

VDAC2voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]
SUBAcon: [cytosol,nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.