Factsheet for Zm00001d027580_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95548	Sorghum	cytosol, mitochondrion	93.29	95.65
Zm00001d027578_P001	Maize	peroxisome	80.21	89.02
Os03t0137500-01	Rice	mitochondrion	80.92	82.97
TraesCS5A01G505700.1	Wheat	nucleus	75.97	78.47
TraesCS4B01G336100.1	Wheat	nucleus	75.62	78.1
TraesCS4D01G331900.1	Wheat	nucleus	75.27	77.74
Zm00001d048362_P002	Maize	endoplasmic reticulum, plasma membrane	86.93	66.31
GSMUA_Achr8P14200_001	Banana	extracellular, plasma membrane	62.19	58.86
KRH02881	Soybean	mitochondrion	54.42	55.6
KRH19015	Soybean	cytosol	54.42	55.6
VIT_11s0052g01030.t01	Wine grape	cytosol	53.71	54.87
Solyc07g008350.2.1	Tomato	cytosol, plastid	52.65	53.99
CDY11866	Canola	cytosol	50.88	52.55
CDX88625	Canola	cytosol	50.53	52.19
Bra006817.1-P	Field mustard	cytosol	50.53	52.19
AT5G57490.1	Thale cress	cytosol	49.82	51.46
Zm00001d020219_P004	Maize	cytosol	44.88	46.01
Bra002725.1-P	Field mustard	cytosol	25.09	44.65
Zm00001d044318_P001	Maize	cytosol, mitochondrion	42.4	43.64
Zm00001d005649_P001	Maize	cytosol	16.25	42.59
Zm00001d048149_P002	Maize	mitochondrion	41.34	42.55
Zm00001d038840_P001	Maize	mitochondrion	41.34	42.39
Zm00001d028102_P001	Maize	mitochondrion	40.64	41.82
Zm00001d011135_P001	Maize	cytosol, mitochondrion, nucleus	38.52	39.35
Zm00001d011242_P002	Maize	cytosol	42.05	39.27
CDY38301	Canola	cytosol	22.97	39.16
Zm00001d043661_P001	Maize	cytosol	36.75	37.55
CDY25906	Canola	plasma membrane	42.05	35.42

Protein Annotations

Gene3D:2.40.160.10	MapMan:24.4.1	UniProt:A0A1D6JN64	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0055085	InterPro:IPR023614	ProteinID:ONL93480.1	PFAM:PF01459	PANTHER:PTHR11743	PANTHER:PTHR11743:SF27
InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniParc:UPI0008428B8C	EnsemblPlantsGene:Zm00001d027580	EnsemblPlants:Zm00001d027580_P001	EnsemblPlants:Zm00001d027580_T001

Description

Mitochondrial outer membrane protein porin 4

Coordinates

chr1:+:8369095..8371979

Molecular Weight (calculated)

30435.1 Da

IEP (calculated)

9.708

GRAVY (calculated)

-0.206

Length

283 amino acids

Sequence
(BLAST)

001: MSKGPVPFAN IGKRAKGKHL LFNNLLYKDY NFDQKFSLST CSNSGLNLTA TGVKINEDFI GDIRTQHKSG RTTVDVIIDS DSKVSTTVTV DEALTGLKTS
101: FAFKVPDHKS GKLDLQYAHN RFSMNSTIGL TSTPLVELAA TVGTSELAIG AEFGFDSTSA AVTKYNSGVG YNKSDFSASL LLADKGETLK ASYVHLFNPT
201: NGATVAAEVT HKLKTKENYF TLGSSHALDP STLLKTRFSN SGKVGLLCQH EWRPKSLVTL SAEYDPKVVS APSRIGVAIS LKP

Best Arabidopsis Sequence Match ( AT5G57490.1 )
(BLAST)

001: MGSSPAPFAD IGKKAKDLLN KDYIFDHKFT LTMLSATGTE FVATGLKKDD FFFGDISTLY KGQNTIVDLK IDSHSSVSTK VTLKNLLPSA KAVISFKIPD
101: HKSGKLDVQY VHPHATLNSS IGLNPTPLLD LSATIGSQNV CLGGEVSFDT ASSSLTKYNA GIGFNNQGVS AALILEDKGE SLRATYVHTV NPTTSFGAEL
201: IRRFSNYNNS FTVGSSHSVD QFTVVKTRFS NSGKAGMVVQ REWRPKSHIT FSAEYDSKAV TSSPKLGLAL ALKP

Arabidopsis Description

VDAC4Mitochondrial outer membrane protein porin 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.