Factsheet for Zm00001d044318_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03185	Sorghum	cytosol	93.45	93.45
Os01t0588200-01	Rice	mitochondrion, plasma membrane	88.73	88.73
TraesCS3B01G241200.1	Wheat	cytosol, golgi, unclear	86.18	86.18
TraesCS3D01G213400.1	Wheat	cytosol	85.82	85.82
HORVU3Hr1G051010.2	Barley	cytosol, plasma membrane	85.82	85.82
TraesCS3A01G210600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	85.45	85.45
Zm00001d011242_P002	Maize	cytosol	91.64	83.17
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	68.73	68.73
GSMUA_Achr7P00060_001	Banana	cytosol	68.36	68.36
GSMUA_Achr3P20500_001	Banana	cytosol	66.18	66.18
Zm00001d038840_P001	Maize	mitochondrion	64.73	64.49
Zm00001d020219_P004	Maize	cytosol	63.64	63.41
Zm00001d005649_P001	Maize	cytosol	24.36	62.04
Zm00001d011135_P001	Maize	cytosol, mitochondrion, nucleus	55.27	54.87
Zm00001d043661_P001	Maize	cytosol	53.45	53.07
Zm00001d027580_P001	Maize	mitochondrion	43.64	42.4
Zm00001d027578_P001	Maize	peroxisome	38.55	41.57
Zm00001d048149_P002	Maize	mitochondrion	40.73	40.73
KRH56957	Soybean	cytosol	36.0	40.41
KRH03426	Soybean	cytosol	35.64	40.0
Zm00001d028102_P001	Maize	mitochondrion	39.27	39.27
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	35.27	37.6
PGSC0003DMT400065213	Potato	cytosol	32.36	37.24
Solyc03g113210.2.1	Tomato	cytosol	31.64	36.86
KRH63406	Soybean	cytosol	32.73	36.29
KRH54504	Soybean	cytosol	31.64	35.08
Zm00001d048362_P002	Maize	endoplasmic reticulum, plasma membrane	43.27	32.08
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	16.36	27.61
CDY39954	Canola	extracellular	16.36	21.23
CDY01000	Canola	endoplasmic reticulum, plasma membrane	26.55	20.22

Protein Annotations

EntrezGene:100273703	Gene3D:2.40.160.10	MapMan:24.4.1	UniProt:B4FX24	EMBL:BT041662	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008308	GO:GO:0015698	GO:GO:0016020
GO:GO:0055085	GO:GO:0098656	InterPro:IPR023614	ProteinID:ONM40874.1	PFAM:PF01459	ScanProsite:PS00558
PANTHER:PTHR11743	PANTHER:PTHR11743:SF33	InterPro:Porin_Euk	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	UniParc:UPI00017B7634
EnsemblPlantsGene:Zm00001d044318	EnsemblPlants:Zm00001d044318_P001	EnsemblPlants:Zm00001d044318_T001	:	:	:

Description

Mitochondrial outer membrane protein porin 3

Coordinates

chr3:-:225067705..225070108

Molecular Weight (calculated)

29795.2 Da

IEP (calculated)

7.946

GRAVY (calculated)

-0.251

Length

275 amino acids

Sequence
(BLAST)

001: MAPGLYTDIG KKTRDLLYKD YNTHQKFSLT TCSPHGIAIT AAGTRKNEST FGDLHTQIKN NKLTVDVKAN SESDLLTTIT VDEIGTPGLK SILTLVVPDQ
101: RSGKLELQYL HEYTGVNASI GLNSNPMVNL SGAFGSKALS VGVDVSFDTE TSNFTKYNAA LSLANPDLIA SLHLNNHGDT LVASYYHLVK HHSGTAVGAE
201: LSHSISRNES TLIFGSQHSL DPHTTVKARF NNYGMASALV QHEWRPKSFI TVSGEVDTRA IEKSTKVGLS LVLKH

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.